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    7 repositories

    • airrflow

      Public
      B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
      Nextflow
      •
      MIT License
      •45•0•0•0•Updated May 29, 2025May 29, 2025

    • HRD-predictions-cell-lines

      Public
      Code associated with "Pan-cancer Analysis of Homologous Recombination Deficiency in Cell Lines"
      R
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Jun 26, 2024Jun 26, 2024

    • shinyTree

      Public
      Shiny integration with the jsTree library
      JavaScript
      •
      Other
      •64•0•0•1•Updated Feb 22, 2024Feb 22, 2024

    • ksqShinyTree

      Public
      Shiny integration with the jsTree library
      JavaScript
      •
      Other
      •64•0•0•0•Updated Oct 20, 2023Oct 20, 2023

    • nf-core-rnaseq

      Public
      RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
      Nextflow
      •
      MIT License
      •805•0•0•0•Updated Jun 14, 2023Jun 14, 2023

    • gatk

      Public
      Official code repository for GATK versions 4 and up
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •617•0•0•0•Updated May 21, 2020May 21, 2020

    • farver

      Public
      High Performance Colourspace Manipulation in R
      R
      •
      Other
      •14•0•0•0•Updated Feb 25, 2020Feb 25, 2020