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    8 repositories

    • epic2

      Public
      Ultraperformant reimplementation of SICER
      Cython
      •
      MIT License
      •10•58•35•0•Updated Dec 1, 2025Dec 1, 2025

    • ldetect_original

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Jan 8, 2020Jan 8, 2020

    • snpflip

      Public archive
      Report reverse and ambiguous strand SNPs in GWAS data
      Python
      •9•33•4•0•Updated May 15, 2019May 15, 2019

    • kerneltree

      Public
      Ultrafast interval trees from the kernel. Deprecated in favor of the NCLS.
      C
      •
      Other
      •6•26•0•0•Updated Apr 8, 2019Apr 8, 2019

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •3.7k•0•0•0•Updated Jan 24, 2019Jan 24, 2019

    • epic

      Public
      (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
      bioinformaticssicer-algorithmchip-seqpeak-callersicerchip-seq-callers
      Python
      •
      MIT License
      •6•31•27•0•Updated Nov 21, 2018Nov 21, 2018

    • chip_seq_pipeline

      Public
      ChIP-Seq Analysis Pipeline with emphasis on differential expression
      Python
      •0•9•0•0•Updated Oct 16, 2018Oct 16, 2018

    • hisat2_index

      Public
      Python
      •0•0•0•0•Updated Jun 21, 2017Jun 21, 2017