Repositories list

• github-ai-integrations

  Public
  Copier template for adding AI integrations to a GH repo

  monarchinitiativeai4curation

  Jinja

  •

  MIT License

  •0•5•0•0•Updated Oct 22, 2025Oct 22, 2025

• aidocs

  Public
  documentationartificial-intelligenceontologies+ 4biocurationmonarchinitiativeobofoundryai4curation

  Just

  •2•7•17•2•Updated Oct 22, 2025Oct 22, 2025

• curation-skills

  Public
  Claude skills for a variety of curation and knowledge-based tasks. We currently have 3 skills included, but intend to grow this.

  monarchinitiativeai4curation

  Perl

  •0•10•0•0•Updated Oct 22, 2025Oct 22, 2025

• ai-gene-review

  Public
  Demonstration of AI review of existing functional annotations

  geneontologyfunctional-annotationmonarchinitiative+ 3agentic-aiclaude-codeai4curation

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •3•3•0•5•Updated Oct 17, 2025Oct 17, 2025

• ai4curation.github.io

  Public
  main web page

  HTML

  •0•0•0•0•Updated Oct 5, 2025Oct 5, 2025

• metacoder

  Public
  Wrapper for multiple AI coders (goose, claude code, codex)

  command-linemcpevaluation+ 3artificial-intelligencecoding-assistantmcp-server

  Python

  •1•9•20•4•Updated Sep 18, 2025Sep 18, 2025

• ai-gene-curation

  Public archive
  EXPERIMENTAL repo

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•4•Updated Aug 13, 2025Aug 13, 2025

• ontoeval

  Public
  Generates and runs evaluation benchmarks for ontology changes

  Python

  •

  MIT License

  •2•1•0•0•Updated Jul 8, 2025Jul 8, 2025

• goose-ai-linkml-action

  Public
  github action to trigger goose linkml agent

  Apache License 2.0

  •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• obi-tutorial

  Public
  The Ontology for Biomedical Investigations (forked for tutorial purposes)

  Python

  •

  Creative Commons Attribution 4.0 International

  •31•0•0•0•Updated Jun 9, 2025Jun 9, 2025

• robot-mcp

  Public
  A model context protocol server for working with robot OWL templates

  mcpsemantic-webartificial-intelligence+ 4web-ontology-languagemonarchinitiativeobofoundrymcp-server

  Python

  •0•0•0•0•Updated Jun 9, 2025Jun 9, 2025

• ai-ontology-tutorial

  Public
  0•0•0•0•Updated Jun 5, 2025Jun 5, 2025

• owl-mcp

  Public
  MCP server for OWL applications

  aimcpsemantic-web+ 4ontologyweb-ontology-languagemonarchinitiativemodel-context-protocol

  Python

  •1•10•1•0•Updated Jun 5, 2025Jun 5, 2025

• odk-ai

  Public
  Extension of ODK for AI coding

  artificial-intelligencemonarchinitiativeobofoundry+ 1ontology-development-kit

  Shell

  •2•3•14•2•Updated Jun 4, 2025Jun 4, 2025

• ai-mention-detector-action

  Public
  GitHub action for detecting AI mentions

  Apache License 2.0

  •0•0•0•0•Updated Jun 4, 2025Jun 4, 2025

• goose-ai-obo-action

  Public
  GitHub action for running goose over obo format repos

  Apache License 2.0

  •0•1•1•0•Updated Jun 4, 2025Jun 4, 2025

• agent-tutorial

  Public
  Monarch agent tutorial

  tutorialsartificial-intelligencemonarchinitiative+ 2obofoundrypydantic-ai

  Python

  •2•9•0•0•Updated Apr 15, 2025Apr 15, 2025

• ontodiff-curator

  Public
  Results for running agents on ontoeval benchmarks

  Python

  •

  MIT License

  •1•0•0•0•Updated Sep 5, 2024Sep 5, 2024