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    20 repositories

    • beacon-defense-strategies

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Sep 11, 2025Sep 11, 2025

    • RNAGEN

      Public
      A generative adversarial network-based model to generate synthetic RNA sequences to target proteins
      Python
      •0•11•0•0•Updated Sep 2, 2025Sep 2, 2025

    • RNAtranslator

      Public
      RNAtranslator: Modeling protein-conditional RNA design as sequence-to-sequence natural language translation
      Python
      •2•8•3•0•Updated Aug 12, 2025Aug 12, 2025

    • UTRGAN

      Public
      Learning to Generate UTR Sequences for Optimized Ribosome Load and Gene Expression
      Jupyter Notebook
      •5•21•0•0•Updated May 11, 2025May 11, 2025

    • LYCEUM

      Public
      Learning to Call Copy Number Variants on Low Coverage Ancient Genomes
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•3•0•0•Updated Feb 6, 2025Feb 6, 2025

    • ECOLE

      Public
      Python
      •7•26•6•0•Updated Dec 6, 2024Dec 6, 2024

    • PiDeeL

      Public
      Source code for "Pathway-informed deep learning model for survival analysis and pathological classification of gliomas"
      Python
      •
      MIT License
      •1•5•0•0•Updated May 29, 2024May 29, 2024

    • DeepND

      Public
      DeepND ASD & ID
      Python
      •1•12•0•0•Updated Apr 29, 2022Apr 29, 2022

    • targeted_brain_tumor_margin_assessment

      Public
      Source code for "Targeted Metabolomics Analyses for Brain Tumor Margin Assessment During Surgery"
      Python
      •
      MIT License
      •1•5•0•0•Updated Apr 6, 2022Apr 6, 2022

    • KinshipInference

      Public
      Source code for the paper "The Effect of Kinship in Re-Identification Attacks Against Genomic Data Sharing Beacons"
      MATLAB
      •
      MIT License
      •0•1•0•0•Updated Apr 19, 2021Apr 19, 2021

    • GenomeReconstruction

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 26, 2021Feb 26, 2021

    • macarons

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Feb 12, 2021Feb 12, 2021

    • HRMAS_NC

      Public
      Source code for "Machine Learning Assisted Intraoperative Assessment of Brain Tumor Margins Using HRMAS NMR Spectroscopy"
      Python
      •1•1•0•0•Updated Nov 13, 2020Nov 13, 2020

    • DECoNT

      Public
      Exome Copy Number Variation Polisher via Deep Learning
      Python
      •3•18•0•0•Updated Jun 1, 2020Jun 1, 2020

    • matchmaker

      Public
      Initial Commit
      Python
      •
      MIT License
      •9•0•0•0•Updated May 24, 2020May 24, 2020

    • potpourri

      Public
      C++
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 31, 2019Dec 31, 2019

    • DeepSide

      Public
      Python
      •
      MIT License
      •2•0•0•0•Updated Nov 19, 2019Nov 19, 2019

    • ST-Steiner

      Public
      Python
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated May 8, 2018May 8, 2018

    • spadis

      Public
      An algorithm for Selecting Predictive and Diverse SNPs in GWAS
      C++
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Mar 20, 2018Mar 20, 2018

    • beacon_attack

      Public
      MATLAB
      •0•0•0•0•Updated Feb 12, 2018Feb 12, 2018