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    14 repositories

    • Schoeberl_Fitz_vonderLinde_et_al

      Public
      repository for Tri-C data related code for Schoeberl, Fitz, von der Linde et al.
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Mar 9, 2025Mar 9, 2025

    • hicer-nf

      Public
      Nextflow workflow for basic HiC data processing
      dockernextflownext-generation-sequencinghi-c3d-genome
      HTML
      •
      MIT License
      •1•4•0•0•Updated Feb 20, 2025Feb 20, 2025

    • Malzl_Peycheva_et_al_2023

      Public
      Repository for code of analyses presented in the paper
      Jupyter Notebook
      •0•0•0•0•Updated Nov 9, 2023Nov 9, 2023

    • inisite-nf

      Public
      Nextflow workflow for reproducible SNS-seq peak calling
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 15, 2023Sep 15, 2023

    • IgH_VDJ_PROcapseq

      Public
      Python
      •
      MIT License
      •1•1•0•0•Updated Jun 13, 2023Jun 13, 2023

    • IgH_VDJ_MutPE

      Public
      Python
      •
      MIT License
      •1•2•0•0•Updated Jun 13, 2023Jun 13, 2023

    • mm9_AID_off_targets_PROseq_PROcap_mutations_cytosines

      Public
      R
      •0•0•0•0•Updated Apr 2, 2023Apr 2, 2023

    • repliseq-nf

      Public
      Nextflow workflow for basic RepliSeq data processing
      dockerreplicationnextflowsequencingnext-generation-sequencing
      Nextflow
      •
      MIT License
      •0•4•1•0•Updated Oct 30, 2022Oct 30, 2022

    • costea_schoeberl_et_al

      Public
      repository for Tri-C and Micro-C data related code for Costea and Schoeberl et al.
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Oct 27, 2022Oct 27, 2022

    • hic_analysis

      Public
      This repo contains code and instructions on various possible analyses of Hi-C data
      Jupyter Notebook
      •0•2•0•0•Updated Jul 19, 2022Jul 19, 2022

    • qcat

      Public
      qcat is Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
      Python
      •
      Mozilla Public License 2.0
      •18•0•0•0•Updated Jul 14, 2022Jul 14, 2022

    • geneIS-nf

      Public
      Nextflow workflow for reproducible annotation initiation sites with genetic features
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 9, 2021Jul 9, 2021

    • classifyIS-nf

      Public
      Nextflow workflow to reproducibly quantify NS-seq reads in called initiation sites and classify them according to specific rules
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 6, 2020Aug 6, 2020

    • snv-calling-nf

      Public
      Nextflow workflow for SNV calling using GATK4 / MuTect2, CaVEMan / Pindel and Strelka2
      Nextflow
      •
      MIT License
      •1•0•0•0•Updated Nov 22, 2018Nov 22, 2018