Repositories list

• syngraph

  Public
  Toolkit for evolutionary analyses of linkage groups

  Python

  •

  GNU General Public License v3.0

  •3•0•0•0•Updated Nov 24, 2025Nov 24, 2025

• Fly-Germ-Line-Chromosomes

  Public
  R

  •1•0•1•0•Updated Oct 22, 2025Oct 22, 2025

• synteny_plotter

  Public
  A tool to visualise synteny relationships between genomes.

  R

  •

  MIT License

  •1•0•0•0•Updated Sep 10, 2025Sep 10, 2025

• genomescope-convergence

  Public
  R

  •0•0•0•0•Updated Jul 31, 2025Jul 31, 2025

• busco2synteny

  Public
  Scripts to generate synteny plots from BUSCO results

  Python

  •2•3•0•0•Updated Mar 3, 2025Mar 3, 2025

• TRASH_recycling

  Public
  Scripts to post-process and filter TRASH output

  R

  •0•0•0•0•Updated Feb 28, 2025Feb 28, 2025

• nf_pipelines

  Public
  Nextflow

  •1•0•0•0•Updated Nov 28, 2024Nov 28, 2024

• springtail_haploid_selection

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Nov 28, 2024Nov 28, 2024

• ToL-scripts

  Public
  for small pieces of code for analysing files we generate here at the Tree of Life

  R

  •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024