Imageomics Institute

All

91 repositories

bioclip-vector-db
Public
Vector database training data retrieval of BioCLIP-embedded nearest neighbors.
Python
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MIT License
•1•0•6•2•Updated Oct 17, 2025Oct 17, 2025
KABR
Public
Centralized resource to describe and link out to all components of the KABR project (Kenyan Animal Behavior Recognition).
behavior data tools code models pipelines kabr ungulates mini-scenes
HTML
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Creative Commons Zero v1.0 Universal
•0•0•0•0•Updated Oct 17, 2025Oct 17, 2025
Collaborative-distributed-science-guide
Public template
Template guide to collaborative work, including GitHub and Hugging Face workflows. Co-developed with the Imageomics Guide.
git metadata documentation data code guide best-practices models projects collaboration
Python
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Creative Commons Zero v1.0 Universal
•0•0•4•1•Updated Oct 17, 2025Oct 17, 2025
bioclip-2
Public
Repository for the BioCLIP 2 model project. [NeurIPS'25 Spotlight]
computer-vision taxonomy biology clip knowledge-guided-machine-learning imageomics
Python
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Other
•6•35•1•1•Updated Oct 17, 2025Oct 17, 2025
kabr-tools
Public
Tools for working with data for annotating animal behavior. These were specifically designed during construction of the KABR dataset.
video drone annotation conservation zebra giraffe cvat animal-behavior-recognition drone-videos
Python
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MIT License
•0•6•16•7•Updated Oct 17, 2025Oct 17, 2025
Imageomics-guide
Public
Imageomics-focused guide to collaborative work, including GitHub and Hugging Face workflows.
git metadata documentation data code guide best-practices models projects collaboration
Python
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Creative Commons Zero v1.0 Universal
•0•4•11•1•Updated Oct 15, 2025Oct 15, 2025
pybioclip
Public
Python package that simplifies using the BioCLIP foundation model.
Python
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MIT License
•8•40•5•1•Updated Oct 15, 2025Oct 15, 2025
HDR-SMood-Challenge-sample
Public
Sample Submission Repository for the 2025 HDR Scientific Mood Challenge (Modeling out of distribution).
sample-code out-of-distribution beetles ml-challenge
Python
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MIT License
•0•0•0•0•Updated Oct 6, 2025Oct 6, 2025
catalog
Public
Repository for Imageomics data, model, and code catalog.
data catalog models spaces keyword-search imageomics
JavaScript
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MIT License
•0•0•4•0•Updated Oct 3, 2025Oct 3, 2025
hpc-inference
Public
A high-performance computing solution for efficient batch inference on large-scale image datasets.
Python
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MIT License
•0•0•8•1•Updated Oct 1, 2025Oct 1, 2025
cautious-robot
Public
Simple images from CSV downloader that runs and records checksums on downloaded image folder.
csv download images checksums verifier downsized
Python
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MIT License
•0•4•9•0•Updated Sep 25, 2025Sep 25, 2025
HDR-anomaly-challenge-sample
Public
Sample Submission Repository for the 2024 HDR Anomaly Challenge
sample-code anomaly-detection butterflies ml-challenge
Jupyter Notebook
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MIT License
•4•6•1•5•Updated Sep 23, 2025Sep 23, 2025
cliparoo
Public
A video clipper, cutter, and splicer.
cli video editing
Python
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Apache License 2.0
•0•0•0•0•Updated Sep 23, 2025Sep 23, 2025
emb-explorer
Public
An interactive tool for classifying images with a pretrained model and exploring clustering results in 2D space.
Python
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MIT License
•0•0•0•4•Updated Sep 22, 2025Sep 22, 2025
awesome-imageomics
Public
List of awesome tools, dataset, models, workflows, and papers for imageomics endeavors
Creative Commons Zero v1.0 Universal
•0•0•0•0•Updated Sep 19, 2025Sep 19, 2025
HDR-SMood-Challenge
Public
Repository for Imageomics' CodaBench challenge as part of the HDR Scientific Mood ML Challenge.
out-of-distribution beetles ml-challenge
Python
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MIT License
•0•2•0•0•Updated Sep 16, 2025Sep 16, 2025
naturelab
Public
Bridging Digital and Natural Worlds at The Wilds
drone biology gps-tracker ecology multi-modal camera-traps bioacoustics
Jupyter Notebook
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MIT License
•2•2•0•0•Updated Sep 9, 2025Sep 9, 2025
SST
Public
Official repo for paper "Static Segmentation by Tracking: A Frustratingly Label-Efficient Approach to Fine-Grained Segmentation"
Python
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MIT License
•3•9•0•7•Updated Sep 3, 2025Sep 3, 2025
2018-NEON-beetles-processing
Public
Processing code and exploratory notebooks for BeetlePalooza dataset (2018 NEON Ethanol-preserved Ground Beetles).
annotation images eda segmentation beetles
Jupyter Notebook
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MIT License
•2•0•0•2•Updated Sep 3, 2025Sep 3, 2025
phylo-diffusion
Public
Code Repository for Phylo-Diffusion. Accepted at ECCV 2024
Python
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MIT License
•1•6•1•0•Updated Sep 3, 2025Sep 3, 2025
tree-seedling-detection
Public
improving detection of micro and macro-scale functional traits
Python
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MIT License
•0•2•0•0•Updated Aug 29, 2025Aug 29, 2025
Imageomics-NeurIPS-2025
Public
Imageomics: Discovering Biological Knowledge from Images Using AI workshop at NeurIPS 2025
HTML
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Creative Commons Zero v1.0 Universal
•0•1•0•0•Updated Aug 21, 2025Aug 21, 2025
global-egg-trait
Public
Python
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MIT License
•0•0•4•0•Updated Aug 21, 2025Aug 21, 2025
mimicry-madness
Public
Project repo for mimicry exploration during FuncaPalooza 2025!
Jupyter Notebook
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MIT License
•0•1•0•0•Updated Aug 21, 2025Aug 21, 2025
dna-trait-analysis
Public
Goal: to find associations between dna data and visual traits.
Jupyter Notebook
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MIT License
•0•4•7•0•Updated Aug 19, 2025Aug 19, 2025
Beyond-Beetle-Body-Size
Public
Funcapalooza 2025 Beetle Group - exploring traits beyond beetle body size
MIT License
•0•1•0•0•Updated Aug 19, 2025Aug 19, 2025
FuncaPalooza-2025
Public
FuncaPalooza: collaborative hands-on event for extracting functional traits from images at OSU, Aug 18-21, 2025.
Creative Commons Zero v1.0 Universal
•0•5•23•0•Updated Aug 19, 2025Aug 19, 2025
2025-08-15-osu-online
Public
Software Carpentry Workshop on Version Control with Git and R for Scientific Reproducibility
HTML
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Other
•0•0•0•0•Updated Aug 15, 2025Aug 15, 2025
Image-Datapalooza-2023
Public
Repository for the Image Datapalooza 2023 event held at OSU in August 2023.
Creative Commons Zero v1.0 Universal
•2•3•8•0•Updated Aug 6, 2025Aug 6, 2025
HDR-anomaly-challenge
Public
Repository for Imageomics' CodaBench challenge as part of the HDR Anomaly ML Challenge.
anomaly-detection butterflies hybrid-detection ml-challenge
Python
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MIT License
•1•5•1•4•Updated Aug 6, 2025Aug 6, 2025