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Artificial intelligence and computational medicine (ELMED219) - course material 2025
A browser based Pokémon fangame heavily inspired by the roguelite genre.
Hypercubic Inference for Large-Scale Genomic Data
Scripts to download and preprocess data, run hypercubic inference and plot results used for my poster on the Norwegian Bioinformatics Days 2024.
Fast reconstruction of spatial networks from bioimages.
🎄Visualization and annotation of phylogenetic trees
A preprint of this paper is available on bioRxiv. The main use of this fork is pull requests to the upstream repository, please refer to it instead.
HyperTraPS discrete time framework for inferring high-dimensional pathways of trait acquisition.
HyperMk for reversible accumulation modelling
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
Flexible inference of accumulation pathways for cancer, evolution, disease progression, and more
Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.
Hypercubic inference using Hidden Markov Models
Simple, low-level HyperTraPS code for projects
An emoji guide for your commit messages. 😜
Course website for the 2022 version of the DLN course "A hands-on course on artificial intelligence in computational biotechnology and medicine"
🧠 A study guide to learn about Transformers
A minimal PyTorch re-implementation of the OpenAI GPT (Generative Pretrained Transformer) training
Open source code for AlphaFold 2.
Inter- and intra- patient ECG heartbeat classification for arrhythmia detection: a sequence to sequence deep learning approach
ECG Arrhythmia classification using CNN
ECG classification programs based on ML/DL methods