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Python interface for accessing Nextstrain SARS-CoV-2 sequence and clade data

Python 6 2 Updated Nov 21, 2025

😷 R package to Retrieve U.S. Flu Season Data from the CDC FluView Portal (WHO & ILINet)

R 56 21 Updated Aug 27, 2023

Inferring variant-specific effective reproduction numbers from combined case and sequencing data

Mathematica 46 5 Updated Jun 27, 2025

Data and code behind the articles and graphics at FiveThirtyEight

Jupyter Notebook 17,235 11,143 Updated Feb 25, 2025

All the data behind How Good Are FiveThirtyEight Forecasts?

27 30 Updated Feb 2, 2023

Application for assessing the many different models available for understanding COVID19 transmission and spread

R 231 100 Updated Jan 23, 2024

Projections of COVID-19, in standardized format

Jupyter Notebook 455 326 Updated Nov 21, 2024

Alfred workflow for quick translations

PHP 96 6 Updated Oct 17, 2020

Realtime Data Management Platform

JavaScript 4 5 Updated Sep 11, 2025

Data repository of publicly available Zika data

HTML 166 116 Updated Aug 7, 2019

Code and modeled data for JRSI paper on estimating cross-protection between dengue serotypes.

R 1 4 Updated Mar 11, 2014

An R package for analyzing censored and under-reported surveillance data.

R 9 6 Updated Apr 11, 2025