Amplicon Sequencing Analysis Pipeline

JSON for Modern C++

whole genome MLST analysis

Surveillance of pathogens using population genomics and sequencing

Peptide library design

This version of Varia is outdated, please use the Varia repository. Varia predicts the sequence of var genes in Plasmodium falciparum. Varia is designed to use the DBL alpha tags supplied by the us…

An algorithm for classifying malaria var genes into ups groups

🌺 reference-free transcriptome assembly for short and long reads

A Python package for working with Bactopia

Simulate malaria mixed infections from VCF files

Analyse MalariaGEN data from Python

Sorts amplicons from Nanopore sequencing data based on similarity

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Gzip Decompression and Random Access for Modern Multi-Core Machines

Data quality assessment and metadata reporting for data frames and database tables

Efficient low-divergence mapping of long reads in minimizer space

🎓 Path to a free self-taught education in Computer Science!

Script how to assemble var genes in Plasmodium falciparum

a tool for inferring species tree from sequencing reads

Fast and accurate de novo assembler for long reads

Download FASTQ files from SRA or ENA repositories.

Implement Download Buttons in rmarkdown 💾

Make Interactive Complex Heatmaps

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

hybrid assembly pipeline for bacterial genomes

munsell colour system for R

Use Font Awesome icons in HTML and PDF documents.

Zstandard - Fast real-time compression algorithm