SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED fil…

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

❗ This is a read-only mirror of the CRAN R package repository. iC10 — A Copy Number and Expression-Based Classifier for Breast Tumours

GitHub action for generating markdown docs for python code

OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

Code and files for the main nf-core website.

Repository to host tool-specific module files for the Nextflow DSL2 community!

FRASER - Find RAre Splicing Events in RNA-seq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Conda recipes for the bioconda channel.

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

Matlab implementation of the ECO tracker.

AML network