A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.

website for the rnaseq course

ENCODE ATAC-seq pipeline

R & stats illustrations by @allison_horst

R for data science: a book

A list of R conferences and user groups

Repository for an academic paper, tutorial and code related to the application of web application user interfaces to health economics.

Pretty plotting for SCE objects.

Save Microsoft Stream videos for offline enjoyment.

Uniform Manifold Approximation and Projection

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Rich is a Python library for rich text and beautiful formatting in the terminal.

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

A curated list of nextflow based pipelines

Single-cell analysis in Python. Scales to >100M cells.

The art of using t-SNE for single-cell transcriptomics

A tool set for short variant discovery in genetic sequence data.

A Framework for Building Robust Shiny Apps

Workflows taking Exome/WGS fastq files to prioritized variants

Repository for all things IHI CodeClub

Authoring Books and Technical Documents with R Markdown

⚠️ ARCHIVED ⚠️ A programmatic interface the Orcid.org API

Exploration of Omics data

This repository contains code and scripts used to generate and analyse data for the superTranscript/Lace paper.

Interactive Heat Maps for R Using plotly

This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many parameter settings. Bioinformatics pipeline: Just Do It!

supporting code for the multinomial single cell RNA-Seq paper

Interactive reporting tool for single cell RNA-seq data.