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toolbuilder Public
Streamlit app for developing a function calling specification for OpenAI assistants
Python MIT License UpdatedDec 22, 2025 -
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dada2-nf Public
A Nextflow pipeline for processing 16S rRNA sequences using dada2
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bioscons Public
Extends the scons build tool for reproducible workflows in bioinformatics.
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pelican-gh-pages Public
Document creation of a Pelican site hosted on GitHub Pages
Python MIT License UpdatedDec 28, 2024 -
pymenu Public
Provides a simple, interactive text-based user interface
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argparse-bash Public
Use python's argparse module in shell scripts
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philter-ucsf Public
Forked from BCHSI/philter-ucsfOpen source clinical text de-identification
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 6, 2023 -
org-export Public
batch export of org-mode files from the command line
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barcodecop Public
Enforce barcode match stringency and read quality in demultiplexed MiSeq reads
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s3simple Public
Forked from paulhammond/s3simpleA bash S3 client with minimal dependencies
Shell MIT License UpdatedSep 2, 2022 -
lab-software-whitepaper Public
A whitepaper describing software development best practices for the clinical laboratory
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pelicandemo Public
demo pelican deployed to github pages with a guthub action
Python UpdatedNov 12, 2021 -
singularity-rstudio Public
Forked from nickjer/singularity-rstudioRStudio Server in a Singularity container
Python MIT License UpdatedJun 29, 2021 -
api-standards-committee Public
Workspace for the Association for Pathology Informatics Standards Committee
UpdatedJan 16, 2021 -
alnvu Public
Reformat and condense multiple sequence alignments to highlight variability
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CLOMP Public
Forked from vpeddu/CLOMPUW Virology's Clinically OK Metagenomic Pipeline
Nextflow GNU General Public License v3.0 UpdatedNov 16, 2020
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