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Merged
jfy133 merged 24 commits into from
May 28, 2025
Merged

PRELOADEDKRAKENUNIQ: Update module. #614

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caf5442
Update module krakenuniq/preloadedkrakenuniq.
muniheart May 16, 2025
9529ae4
Remove ram_chunk_size from preloadedkrakenuniq call and pass it in ex…
muniheart May 16, 2025
45cec57
Update CHANGELOG.md
muniheart May 16, 2025
9f2dca0
Update nextflow_schema.json
muniheart May 16, 2025
a32e045
Update CHANGELOG.md
muniheart May 16, 2025
156f382
Bump Nextflow version to solve isssues with meta maps
jfy133 May 16, 2025
2da3b63
Use enclosure to delay evaluation.
muniheart May 16, 2025
5c1ded8
Merge branch 'dev' of github.com:muniheart/taxprofiler-dev into dev
muniheart May 16, 2025
d7fe327
Move enclosure braces outside array.
muniheart May 16, 2025
84dc1fc
[automated] Fix code linting
nf-core-bot May 17, 2025
8a81758
Reduce `--preload-size` value for krakenuniq.
muniheart May 17, 2025
d2692f2
Merge branch 'dev' of github.com:muniheart/taxprofiler-dev into dev
muniheart May 17, 2025
2f19c01
Reduce `--preload-size` value.
muniheart May 17, 2025
2400024
Reduce `--preload-size` value.
muniheart May 17, 2025
823a98f
Remove duplicate includeConfig.
muniheart May 19, 2025
63c8145
Move ram chunk size to better location in test
jfy133 May 22, 2025
c8f1244
Change memory loading default
jfy133 May 22, 2025
e1b2cc5
Further changelog tweak
jfy133 May 22, 2025
4848c6b
Update CHANGELOG.md
jfy133 May 22, 2025
773fe5c
[automated] Fix code linting
nf-core-bot May 22, 2025
763663d
Move inclusion of `conf/modules.conf` to end of file.
muniheart May 23, 2025
560a1b8
Hopefully satify linting
jfy133 May 26, 2025
ecfcd39
Merge branch 'dev' into dev
jfy133 May 27, 2025
ec3cb40
Satisfy linting
jfy133 May 28, 2025
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Update CHANGELOG.md
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@jfy133
jfy133 authored May 22, 2025
commit 4848c6bec8aa3446a8138e5c6409a3d443b6735f
2 changes: 1 addition & 1 deletion CHANGELOG.md
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Expand Up @@ -7,7 +7,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### `Added`

- [#614](https://github.com/nf-core/taxprofiler/pull/614) Updated module `krakenuniq/preloadedkrakenuniq` to fix preload mechanism. (added by @muniheart with help from / ❤️ to @jfy133)
- [#614](https://github.com/nf-core/taxprofiler/pull/614) Updated module `krakenuniq/preloadedkrakenuniq` to fix preload mechanism. The RAM chunk size can now be customised on a per-database basis. (added by @muniheart with help from / ❤️ to @jfy133)
- [#600](https://github.com/nf-core/taxprofiler/pull/600) Added metaphlan to multiqc report (❤️ to @harper357 for reporting and added by @sofstam)
- [#605](https://github.com/nf-core/taxprofiler/pull/605) Added documentation on how to generate Bracken reports for different taxonomic levels (❤️ to @MajoroMask for reporting and added by @jfy133)

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