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update test assertions in modules template to current recommendations and remove single_end from example meta value #3815

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Merged
mashehu merged 7 commits into from
Oct 10, 2025
Merged

update test assertions in modules template to current recommendations and remove single_end from example meta value #3815

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26f9884
update modules test assertions
mashehu Oct 7, 2025
12a4d47
[automated] Update CHANGELOG.md
nf-core-bot Oct 7, 2025
5fe18d9
update also subworkflow test template
mashehu Oct 7, 2025
ea8781d
remove `single_end` from modules test template
mashehu Oct 7, 2025
e499e94
Merge branch 'add-example-capture-to-modules-test' of github.com:mash…
mashehu Oct 7, 2025
a7749bb
[automated] Update CHANGELOG.md
nf-core-bot Oct 7, 2025
435164d
apply code suggestions
mashehu Oct 8, 2025
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remove single_end from modules test template 
closes #3691
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@mashehu
mashehu committed Oct 7, 2025
commit ea8781db88ce4d94eaed40bc28dacc50f150c3fb
4 changes: 2 additions & 2 deletions nf_core/module-template/tests/main.nf.test.j2
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Expand Up @@ -27,7 +27,7 @@ nextflow_process {
// TODO nf-core: define inputs of the process here. Example:
{% if has_meta %}
input[0] = [
[ id:'test', single_end:false ], // meta map
[ id:'test' ], // meta map
file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/bam/test.paired_end.sorted.bam', checkIfExists: true),
]
{%- else %}
Expand Down Expand Up @@ -62,7 +62,7 @@ nextflow_process {
// TODO nf-core: define inputs of the process here. Example:
{% if has_meta %}
input[0] = [
[ id:'test', single_end:false ], // meta map
[ id:'test' ], // meta map
file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/bam/test.paired_end.sorted.bam', checkIfExists: true),
]
{%- else %}
Expand Down