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Parallelize pytest runs and speed up coverage step #3635

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Merged
mashehu merged 16 commits into from
Jun 30, 2025
Merged

Parallelize pytest runs and speed up coverage step #3635

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12e4a25
try to use xdist one more time
mashehu Jun 23, 2025
a09161a
[automated] Update CHANGELOG.md
nf-core-bot Jun 23, 2025
269b2f5
Merge branch 'dev' into try-xdist-again
mashehu Jun 30, 2025
9fdd7c6
speed up coverage step
mashehu Jun 30, 2025
2404287
upload textual snapshot only for failing textual tests
mashehu Jun 30, 2025
b0cb831
[automated] Update Textual snapshots
nf-core-bot Jun 30, 2025
9acff9b
fix snapshots
mashehu Jun 30, 2025
b4a59f2
use also xdist for snapshot generation
mashehu Jun 30, 2025
ffed18f
fix snapshot with xdist
mashehu Jun 30, 2025
d2193ad
Merge branch 'try-xdist-again' of github.com:mashehu/tools into try-x…
mashehu Jun 30, 2025
62b4f6c
add a delay to fix the snapshot
mashehu Jun 30, 2025
a12f4ac
try different delay
mashehu Jun 30, 2025
744d749
[automated] Update CHANGELOG.md
nf-core-bot Jun 30, 2025
9b8a134
move import to beginning of the file
mashehu Jun 30, 2025
7c969c5
Merge branch 'try-xdist-again' of github.com:mashehu/tools into try-x…
mashehu Jun 30, 2025
aff0986
Merge branch 'dev' into try-xdist-again
mashehu Jun 30, 2025
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upload textual snapshot only for failing textual tests
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@mashehu
mashehu committed Jun 30, 2025
commit 2404287e18ad23b5cf2de19ea94513e854e5d200
3 changes: 2 additions & 1 deletion .github/workflows/pytest.yml
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Expand Up @@ -115,6 +115,7 @@ jobs:
mv .github/.coveragerc .

- name: Test with pytest
id: pytest
run: |
python3 -m pytest tests/${{matrix.test}} --color=yes --cov --cov-config=.coveragerc --durations=0 -n auto && exit_code=0|| exit_code=$?
# don't fail if no tests were collected, e.g. for test_licence.py
Expand All @@ -133,7 +134,7 @@ jobs:

- name: Store snapshot report
uses: actions/upload-artifact@ea165f8d65b6e75b540449e92b4886f43607fa02 # v4
if: always()
if: always() && contains(matrix.test, 'test_create_app') && steps.pytest.outcome == 'failure'
with:
include-hidden-files: true
name: Snapshot Report ${{ env.test }}
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