General: Update CI to test template pipelines with nf-test #3559
add all snapshots
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,109 @@ | ||
| { | ||
| "-profile test": { | ||
| "content": [ | ||
| 4, | ||
| null, | ||
| [ | ||
| "fastqc", | ||
| "fastqc/SAMPLE1_PE_1_fastqc.html", | ||
| "fastqc/SAMPLE1_PE_1_fastqc.zip", | ||
| "fastqc/SAMPLE1_PE_2_fastqc.html", | ||
| "fastqc/SAMPLE1_PE_2_fastqc.zip", | ||
| "fastqc/SAMPLE2_PE_1_fastqc.html", | ||
| "fastqc/SAMPLE2_PE_1_fastqc.zip", | ||
| "fastqc/SAMPLE2_PE_2_fastqc.html", | ||
| "fastqc/SAMPLE2_PE_2_fastqc.zip", | ||
| "fastqc/SAMPLE3_SE_1_fastqc.html", | ||
| "fastqc/SAMPLE3_SE_1_fastqc.zip", | ||
| "fastqc/SAMPLE3_SE_2_fastqc.html", | ||
| "fastqc/SAMPLE3_SE_2_fastqc.zip", | ||
| "multiqc", | ||
| "multiqc/multiqc_data", | ||
| "multiqc/multiqc_data/fastqc-status-check-heatmap.txt", | ||
| "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt", | ||
| "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt", | ||
| "multiqc/multiqc_data/fastqc_per_base_sequence_quality_plot.txt", | ||
| "multiqc/multiqc_data/fastqc_per_sequence_gc_content_plot_Counts.txt", | ||
| "multiqc/multiqc_data/fastqc_per_sequence_gc_content_plot_Percentages.txt", | ||
| "multiqc/multiqc_data/fastqc_per_sequence_quality_scores_plot.txt", | ||
| "multiqc/multiqc_data/fastqc_sequence_counts_plot.txt", | ||
| "multiqc/multiqc_data/fastqc_sequence_duplication_levels_plot.txt", | ||
| "multiqc/multiqc_data/fastqc_sequence_length_distribution_plot.txt", | ||
| "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt", | ||
| "multiqc/multiqc_data/multiqc.log", | ||
| "multiqc/multiqc_data/multiqc_citations.txt", | ||
| "multiqc/multiqc_data/multiqc_data.json", | ||
| "multiqc/multiqc_data/multiqc_fastqc.txt", | ||
| "multiqc/multiqc_data/multiqc_general_stats.txt", | ||
| "multiqc/multiqc_data/multiqc_software_versions.txt", | ||
| "multiqc/multiqc_data/multiqc_sources.txt", | ||
| "multiqc/multiqc_plots", | ||
| "multiqc/multiqc_plots/pdf", | ||
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| "meta": { | ||
| "nf-test": "0.9.2", | ||
| "nextflow": "25.03.1" | ||
| }, | ||
| "timestamp": "2025-05-07T13:52:10.350817122" | ||
| } | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,109 @@ | ||
| { | ||
| "-profile test": { | ||
| "content": [ | ||
| 4, | ||
| null, | ||
| [ | ||
| "fastqc", | ||
| "fastqc/SAMPLE1_PE_1_fastqc.html", | ||
| "fastqc/SAMPLE1_PE_1_fastqc.zip", | ||
| "fastqc/SAMPLE1_PE_2_fastqc.html", | ||
| "fastqc/SAMPLE1_PE_2_fastqc.zip", | ||
| "fastqc/SAMPLE2_PE_1_fastqc.html", | ||
| "fastqc/SAMPLE2_PE_1_fastqc.zip", | ||
| "fastqc/SAMPLE2_PE_2_fastqc.html", | ||
| "fastqc/SAMPLE2_PE_2_fastqc.zip", | ||
| "fastqc/SAMPLE3_SE_1_fastqc.html", | ||
| "fastqc/SAMPLE3_SE_1_fastqc.zip", | ||
| "fastqc/SAMPLE3_SE_2_fastqc.html", | ||
| "fastqc/SAMPLE3_SE_2_fastqc.zip", | ||
| "multiqc", | ||
| "multiqc/multiqc_data", | ||
| "multiqc/multiqc_data/fastqc-status-check-heatmap.txt", | ||
| "multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt", | ||
| "multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt", | ||
| "multiqc/multiqc_data/fastqc_per_base_sequence_quality_plot.txt", | ||
| "multiqc/multiqc_data/fastqc_per_sequence_gc_content_plot_Counts.txt", | ||
| "multiqc/multiqc_data/fastqc_per_sequence_gc_content_plot_Percentages.txt", | ||
| "multiqc/multiqc_data/fastqc_per_sequence_quality_scores_plot.txt", | ||
| "multiqc/multiqc_data/fastqc_sequence_counts_plot.txt", | ||
| "multiqc/multiqc_data/fastqc_sequence_duplication_levels_plot.txt", | ||
| "multiqc/multiqc_data/fastqc_sequence_length_distribution_plot.txt", | ||
| "multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt", | ||
| "multiqc/multiqc_data/multiqc.log", | ||
| "multiqc/multiqc_data/multiqc_citations.txt", | ||
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| "multiqc/multiqc_data/multiqc_fastqc.txt", | ||
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| "multiqc/multiqc_data/multiqc_software_versions.txt", | ||
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| "multiqc/multiqc_plots", | ||
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| "multiqc/multiqc_plots/pdf/fastqc-status-check-heatmap.pdf", | ||
| "multiqc/multiqc_plots/pdf/fastqc_overrepresented_sequences_plot.pdf", | ||
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| "multiqc/multiqc_plots/pdf/fastqc_per_base_sequence_quality_plot.pdf", | ||
| "multiqc/multiqc_plots/pdf/fastqc_per_sequence_gc_content_plot_Counts.pdf", | ||
| "multiqc/multiqc_plots/pdf/fastqc_per_sequence_gc_content_plot_Percentages.pdf", | ||
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| "multiqc/multiqc_plots/png/fastqc_per_base_sequence_quality_plot.png", | ||
| "multiqc/multiqc_plots/png/fastqc_per_sequence_gc_content_plot_Counts.png", | ||
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| "multiqc/multiqc_plots/png/fastqc_top_overrepresented_sequences_table.png", | ||
| "multiqc/multiqc_plots/png/general_stats_table.png", | ||
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| "multiqc/multiqc_plots/svg/fastqc-status-check-heatmap.svg", | ||
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| "multiqc/multiqc_plots/svg/fastqc_per_base_n_content_plot.svg", | ||
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| "multiqc/multiqc_plots/svg/fastqc_sequence_length_distribution_plot.svg", | ||
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| "fastqc_sequence_duplication_levels_plot.txt:md5,3cde2db4033f6c64648976d1174db925", | ||
| "fastqc_sequence_length_distribution_plot.txt:md5,e82b9b14a7e24c0c5f27af97cebb6870", | ||
| "multiqc_citations.txt:md5,4c806e63a283ec1b7e78cdae3a923d4f", | ||
| "multiqc_fastqc.txt:md5,1a41c2158adc9947bff9232962f70110", | ||
| "multiqc_general_stats.txt:md5,0b54e4e764665bd57fe0f95216744a78" | ||
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| ], | ||
| "meta": { | ||
| "nf-test": "0.9.2", | ||
| "nextflow": "25.03.1" | ||
| }, | ||
| "timestamp": "2025-05-07T13:52:01.993722854" | ||
| } | ||
| } |
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is
__snapshots__a standard directory name for snapshots?There was a problem hiding this comment.
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no, I did some research to see how people call these directories but didn't fine any standard. Would you rename it?
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I would call it
snapshotsor maybe.snapshots. the double underscore feels too pythony.