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Configure the default module repository, branch, and path from environment variables. #3481

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Merged
edanielson-ginkgo merged 4 commits into from
Mar 6, 2025
Merged

Configure the default module repository, branch, and path from environment variables. #3481

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d8ab00a
Take default component repo, branch, and org from environment variables
edanielson-ginkgo Mar 5, 2025
109291e
Add test for using the environment variables
edanielson-ginkgo Mar 5, 2025
cf27f83
[automated] Update CHANGELOG.md
nf-core-bot Mar 5, 2025
b221780
Clean up comments
edanielson-ginkgo Mar 5, 2025
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Take default component repo, branch, and org from environment variables
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@edanielson-ginkgo
edanielson-ginkgo committed Mar 5, 2025
commit d8ab00aff06edb92e9c20aefd5b4deaa3e76845d
7 changes: 4 additions & 3 deletions nf_core/components/components_utils.py
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import logging
import os
import re
from pathlib import Path
from typing import TYPE_CHECKING, Dict, List, Optional, Tuple, Union
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log = logging.getLogger(__name__)

# Constants for the nf-core/modules repo used throughout the module files
NF_CORE_MODULES_NAME = "nf-core"
NF_CORE_MODULES_REMOTE = "https://github.com/nf-core/modules.git"
NF_CORE_MODULES_DEFAULT_BRANCH = "master"
NF_CORE_MODULES_NAME = os.environ.get("NF_CORE_MODULES_NAME", "nf-core")
NF_CORE_MODULES_REMOTE = os.environ.get("NF_CORE_MODULES_REMOTE", "https://github.com/nf-core/modules.git")
NF_CORE_MODULES_DEFAULT_BRANCH = os.environ.get("NF_CORE_MODULES_DEFAULT_BRANCH", "master")


def get_repo_info(directory: Path, use_prompt: Optional[bool] = True) -> Tuple[Path, Optional[str], str]:
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