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1929: local modules use remote format from template #3256

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Merged
awgymer merged 14 commits into from
Jan 24, 2025
Merged

1929: local modules use remote format from template #3256

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c1692f5
fix(1929): more type-gating
awgymer Oct 28, 2024
90978ea
fix CHANGELOG.md
nf-core-bot Oct 28, 2024
a5bb0f0
fix(1929): update subworkflow tests and add lint test markdown
awgymer Oct 28, 2024
732c786
Apply suggestions from code review
awgymer Oct 29, 2024
7ba6f79
feat(1929): allow missing files when linting local modules
awgymer Oct 29, 2024
8a1d44a
feat(1929): local linting option now *only* lints local modules. Add …
awgymer Oct 29, 2024
6c9c1b1
feat(1929): don't ask for a module/subworkflow name to lint if lintin…
awgymer Oct 29, 2024
19df044
feat(1929): add test for new pipeline lint check of local component dirs
awgymer Oct 29, 2024
5d1d44b
feat(1929): run todo linting on local subworkflows
awgymer Oct 30, 2024
5689ff6
fix: Update to latest CHANGELOG
awgymer Jan 21, 2025
3f76e99
fix: Clean up CHANGELOG.md
awgymer Jan 21, 2025
391ae2c
Merge branch 'dev' into 1929-local-modules-use-remote-format
awgymer Jan 22, 2025
3dd2e00
fix: broken test. Need to assign component_dir to the parent dir if a…
awgymer Jan 22, 2025
262dea3
fix: Add new lint test to lint config pydantic model
awgymer Jan 22, 2025
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fix: Update to latest CHANGELOG
  • Loading branch information
@awgymer
awgymer committed Jan 21, 2025
commit 5689ff6258ae5bc8f24397392b6e7f0ca87dd4d9
15 changes: 14 additions & 1 deletion CHANGELOG.md
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Expand Up @@ -8,8 +8,11 @@

### Modules

<<<<<<< HEAD
- feat(1929): Make local modules use remote structure ([#3256](https://github.com/nf-core/tools/pull/3256))

=======
>>>>>>> cb7c0d7b (fix: Update to latest CHANGELOG)
### Subworkflows

### General
Expand Down Expand Up @@ -96,16 +99,20 @@
### Modules

- add a panel around diff previews when updating ([#3246](https://github.com/nf-core/tools/pull/3246))
- Modules created in pipelines "local" dir now use the full template ([#3256](https://github.com/nf-core/tools/pull/3256))

### Subworkflows

<<<<<<< HEAD
<<<<<<< HEAD
- Add `nf-core subworkflows patch` command ([#2861](https://github.com/nf-core/tools/pull/2861))
- Improve subworkflow nf-test migration warning ([#3298](https://github.com/nf-core/tools/pull/3298))
=======
- Subworkflows created in pipelines "local" dir now use the full template ([#3256](https://github.com/nf-core/tools/pull/3256))
>>>>>>> 31cffdd5 (feat(1929): allow missing files when linting local modules)
=======
- Add `nf-core subworkflows patch` command ([#2861](https://github.com/nf-core/tools/pull/2861))
- Improve subworkflow nf-test migration warning ([#3298](https://github.com/nf-core/tools/pull/3298))
>>>>>>> cb7c0d7b (fix: Update to latest CHANGELOG)

### General

Expand All @@ -116,6 +123,9 @@
- Update GitHub Actions ([#3237](https://github.com/nf-core/tools/pull/3237))
- add `--dir/-d` option to schema commands ([#3247](https://github.com/nf-core/tools/pull/3247))
<<<<<<< HEAD
<<<<<<< HEAD
=======
>>>>>>> cb7c0d7b (fix: Update to latest CHANGELOG)
- fix headers in api docs ([#3323](https://github.com/nf-core/tools/pull/3323))
- handle new schema structure in `nf-core pipelines create-params-file` ([#3276](https://github.com/nf-core/tools/pull/3276))
- Update Gitpod image to use Miniforge instead of Miniconda([#3274](https://github.com/nf-core/tools/pull/3274))
Expand All @@ -138,9 +148,12 @@
- Update codecov/codecov-action action to v5 ([#3283](https://github.com/nf-core/tools/pull/3283))
- Update gitpod/workspace-base Docker digest to 12853f7 ([#3309](https://github.com/nf-core/tools/pull/3309))
- Update pre-commit hook astral-sh/ruff-pre-commit to v0.8.2 ([#3325](https://github.com/nf-core/tools/pull/3325))
<<<<<<< HEAD
=======
- Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.1 ([#3250](https://github.com/nf-core/tools/pull/3250))
>>>>>>> 31cffdd5 (feat(1929): allow missing files when linting local modules)
=======
>>>>>>> cb7c0d7b (fix: Update to latest CHANGELOG)

## [v3.0.2 - Titanium Tapir Patch](https://github.com/nf-core/tools/releases/tag/3.0.2) - [2024-10-11]

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