Major enhancements

• Removed the guppy basecaller as distributing it via a docker image is a breach to EULA
• Bump minimum Nextflow version from 21.10.3 -> 21.10.3
• Update pipeline template to nf-core/tools 2.7.2
• Update bambu version from 1.0.2 to 2.0.0

Parameters

• Removed --flowcell as nanoseq no longer supports basecalling
• Removed --kit as nanoseq no longer supports basecalling
• Removed --guppy_config as nanoseq no longer supports basecalling
• Removed --guppy_model as nanoseq no longer supports basecalling
• Removed --guppy_gpu as nanoseq no longer supports basecalling
• Removed --guppy_gpu_runners as nanoseq no longer supports basecalling
• Removed --guppy_cpu_threads as nanoseq no longer supports basecalling
• Removed --output_demultiplex_fast5 as nanoseq no longer supports basecalling
• Removed --skip_basecalling as nanoseq no longer supports basecalling
• Removed --skip_pycoqc as nanoseq no longer supports basecalling

Software dependencies