Skip to content

Support long reads assemblers in assembly input #956

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom
Merged
dialvarezs merged 2 commits into from
Dec 3, 2025
Merged

Support long reads assemblers in assembly input #956

dialvarezs merged 2 commits into from
Dec 3, 2025
+8 −7

Conversation

@dialvarezs
Copy link
Member

@dialvarezs dialvarezs commented Dec 3, 2025

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/mag branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@dialvarezs dialvarezs changed the title Support assembly input + long reads Support long reads assemblers in assembly input mode Dec 3, 2025
@dialvarezs dialvarezs changed the title Support long reads assemblers in assembly input mode Support long reads assemblers in assembly input Dec 3, 2025
@dialvarezs dialvarezs merged commit df02889 into nf-core:dev Dec 3, 2025
6 checks passed
@dialvarezs dialvarezs mentioned this pull request Dec 3, 2025
Merged
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Reviewers

@prototaxites prototaxites prototaxites approved these changes

@jfy133 jfy133 Awaiting requested review from jfy133 jfy133 is a code owner

@d4straub d4straub Awaiting requested review from d4straub d4straub is a code owner

@muabnezor muabnezor Awaiting requested review from muabnezor muabnezor is a code owner

Assignees

No one assigned

Labels

None yet

Projects

None yet

Milestone

No milestone

Development

Successfully merging this pull request may close these issues.

2 participants

@dialvarezs @prototaxites