Reduce bbnorm memory #847
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Reduce bbnorm memory #847
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prototaxites
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Aug 13, 2025
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prototaxites
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LGTM!
You were talking about adding some kind of tunable ext option to this and similar modules - is it worth making the 0.8 tunable here with a parameter, even if that proposal isn't supported for all of nf-core?
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Sorry, I didn't see your comment until I had merged. I decided not to make this tunable both because I didn't want to go through the bureaucracy of updating the nf-core module but also as it actually felt a bit overengineered for myself. |
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A bit late but @erikrikarddaniel could we have a follow up PR with a change log update please? otherwise is fine! |
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It's in the change log, under |
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PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).This updates the bbmap/bbnorm module to the current nf-core version plus updates it to give the process only 0.8 of the memory assigned to the task.