PR for first release#54

Merged

kbestak merged 183 commits intomasterfrom

Feb 12, 2024

Commits on Jun 30, 2023

Template update for nf-core/tools version 2.9
nf-core-bot
committed

Commits on Jul 13, 2023

Commits on Aug 10, 2023

Commits on Sep 25, 2023

Template update for nf-core/tools version 2.10
nf-core-bot
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Commits on Oct 6, 2023

Reformatted channel handling for parallelisability
kbestak
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Commits on Oct 10, 2023

Added channel stacking and optional membrane handling - not yet with Cellpose
kbestak
committed

Commits on Oct 11, 2023

Added parameters, Cellpose external model, rewrote channel processing
kbestak
committed

Commits on Oct 16, 2023

Ran Python Black to reformat code
kbestak
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Commits on Oct 17, 2023

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Commits on Nov 16, 2023

Moved docker entrypoint fix from process to docker scope.
FloWuenne
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Commits on Nov 20, 2023

Commits on Nov 27, 2023

Merge pull request #25 from nf-core/nf_test
FloWuenne
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Commits on Nov 28, 2023

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Delete null/pipeline_info/execution_trace_2023-12-02_12-23-56.txt
FloWuenne
authored

Commits on Dec 4, 2023

Commits on Dec 5, 2023

Commits on Dec 6, 2023

Merge pull request #33 from nf-core/maskfilter
FloWuenne
authored

Commits on Dec 8, 2023

Commits on Dec 9, 2023

Updated modules
kbestak
committed

Commits on Dec 11, 2023

Commits on Dec 14, 2023

Publish cropsummary in multiqc folder
kbestak
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Commits on Dec 20, 2023

Template update for nf-core/tools version 2.11.1
nf-core-bot
committed

Commits on Jan 2, 2024

Merge pull request #44 from nf-core/process_resources
kbestak
authored

Commits on Jan 3, 2024

Merged changes from nf-core template
kbestak
committed

Commits on Jan 4, 2024

Commits on Jan 5, 2024

Commits on Jan 6, 2024

Commits on Jan 8, 2024

Commits on Jan 16, 2024