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Fix linting from a comment

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fix_linting.yml
140 workflow runs
140 workflow runs

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Release 2.3.0 Fix linting from a comment #140: Issue comment #270 (comment) created by scwatts
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Update tests and relevant GH Actions workflows / actions Fix linting from a comment #139: Issue comment #265 (comment) created by scwatts
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Apply minor fixes and updates Fix linting from a comment #138: Issue comment #268 (comment) created by scwatts
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Update tests and relevant GH Actions workflows / actions Fix linting from a comment #137: Issue comment #265 (comment) created by scwatts
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Update tests and relevant GH Actions workflows / actions Fix linting from a comment #136: Issue comment #265 (comment) created by scwatts
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LINX error: java.lang.NullPointerException: Cannot read field "CopyNumber" Fix linting from a comment #135: Issue comment #257 (comment) created by fevac
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Apply Hartwig updates, fixes Fix linting from a comment #134: Issue comment #267 (comment) created by scwatts
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LINX error: java.lang.NullPointerException: Cannot read field "CopyNumber" Fix linting from a comment #133: Issue comment #257 (comment) created by scwatts
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LINX error: java.lang.NullPointerException: Cannot read field "CopyNumber" Fix linting from a comment #132: Issue comment #257 (comment) created by fevac
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Update to new runner size syntax Fix linting from a comment #131: Issue comment #258 (comment) created by scwatts
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Update tests and relevant GH Actions workflows / actions Fix linting from a comment #130: Issue comment #265 (comment) created by scwatts
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Feat/hmf reference download Fix linting from a comment #129: Issue comment #264 (comment) created by scwatts
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Update tests and relevant GH Actions workflows / actions Fix linting from a comment #128: Issue comment #265 (comment) created by nf-core-bot
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Amber not finding sites in bam Fix linting from a comment #127: Issue comment #250 (comment) created by kvaldez
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Amber not finding sites in bam Fix linting from a comment #126: Issue comment #250 (comment) created by scwatts
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Amber not finding sites in bam Fix linting from a comment #125: Issue comment #250 (comment) created by kvaldez
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Feat/hmf reference download Fix linting from a comment #124: Issue comment #264 (comment) created by nf-core-bot
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increase runner specs Fix linting from a comment #123: Issue comment #263 (comment) created by nf-core-bot
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increase runner specs Fix linting from a comment #122: Issue comment #262 (comment) created by nf-core-bot
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ci: tune GitHub runners (CPU, RAM, storage) Fix linting from a comment #121: Issue comment #261 (comment) created by nf-core-bot
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Amber not finding sites in bam Fix linting from a comment #120: Issue comment #250 (comment) created by scwatts
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Amber not finding sites in bam Fix linting from a comment #119: Issue comment #250 (comment) created by kvaldez
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Important! Template update for nf-core/tools v3.4.1 Fix linting from a comment #118: Issue comment #254 (comment) created by scwatts
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Amber not finding sites in bam Fix linting from a comment #117: Issue comment #250 (comment) created by scwatts
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LINX error: java.lang.NullPointerException: Cannot read field "CopyNumber" Fix linting from a comment #116: Issue comment #257 (comment) created by scwatts
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