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Nextstrain

Real-time tracking of pathogen evolution

208 followers
https://nextstrain.org
@nextstrain
@[email protected]

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ncov ncov Public

Nextstrain build for SARS-CoV-2

Python 1.4k 406
augur augur Public

Pipeline components for real-time phylodynamic analysis

Python 275 136
auspice auspice Public

Web app for visualizing pathogen evolution

JavaScript 304 169

Repositories

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Showing 10 of 100 repositories

norovirus Public

nextstrain/norovirus’s past year of commit activity

Python 2 MIT 0 6 0 Updated Oct 25, 2025
nextclade_data Public
Datasets for https://github.com/nextstrain/nextclade

nextstrain/nextclade_data’s past year of commit activity

Python 41 37 9 13 Updated Oct 25, 2025
augur Public
Pipeline components for real-time phylodynamic analysis

nextstrain/augur’s past year of commit activity

Python 275 AGPL-3.0 136 236 (1 issue needs help) 40 Updated Oct 24, 2025
ncov-ingest Public
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.

nextstrain/ncov-ingest’s past year of commit activity

Python 37 MIT 19 32 9 Updated Oct 24, 2025
measles Public
Nextstrain build for measles virus

nextstrain/measles’s past year of commit activity

Python 3 8 4 8 Updated Oct 24, 2025
tb Public
Nextstrain build for tuberculosis

nextstrain/tb’s past year of commit activity

Python 3 10 7 2 Updated Oct 24, 2025
seasonal-flu Public
Scripts. config, and snakefiles for seasonal-flu nextstrain builds

nextstrain/seasonal-flu’s past year of commit activity

Python 53 28 27 6 Updated Oct 24, 2025
mpox Public
Nextstrain build for mpox virus

nextstrain/mpox’s past year of commit activity

Python 50 MIT 23 15 8 Updated Oct 24, 2025
forecasts-flu Public
Seasonal influenza variant growth rates and frequency forecasts

nextstrain/forecasts-flu’s past year of commit activity

Python 1 MIT 0 2 1 Updated Oct 24, 2025
nextstrain.org Public
The Nextstrain website

nextstrain/nextstrain.org’s past year of commit activity

JavaScript 97 AGPL-3.0 52 76 10 Updated Oct 24, 2025

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