Multi-subject Single Cell Deconvolution

Chris Titus Tech's Windows Utility - Install Programs, Tweaks, Fixes, and Updates

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

Command-line tool for the visualization of splicing events across multiple samples

SUPPA: Fast quantification of splicing and differential splicing

teaching material

Beginner Python Course

Oncogenicity Variant Interpreter for somatic variants

ASCAT R package

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

WebApps in pure Python. No JavaScript, HTML and CSS needed

Run your GitHub Actions locally 🚀

Package management made easy

Text Only Genome Viewer!

Bookmarks Extension for Visual Studio Code

Interfaces for HDF5-based Single Cell File Formats

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

Apptainer: Application containers for Linux

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Repository to host tool-specific module files for the Nextflow DSL2 community!

Free monospaced font with programming ligatures

A glimpse into your computer's temperature, voltage, fan speed, memory usage and CPU load.

Webin command line submission program.

Tools for working with genomic and high throughput sequencing data.

tools for adding mutations to existing .bam files, used for testing mutation callers

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

A Variant Call Format reader for Python.