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National Center for Genome Resources

5 followers
Santa Fe, NM
http://ncgr.org/
info@ncgr.org

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UMI-analysis UMI-analysis Public

Scripts for processing Illumina sequence data containing unique molecular identifiers (UMI)

C 7 1
java java Public

Various Java apps written at NCGR for a variety of purposes.

Java 5 3
tapioca tapioca Public

Tapioca is a pipeline for Illumina Casava 1.8 genome analyzer/hiseq data.

3 1
quorum quorum Public archive

A flexible bioinformatics search tool.

Ruby 2 1
lis_sequence_search lis_sequence_search Public archive

LIS sequence search

JavaScript 2
rbpa rbpa Public

Transcriptome Assembly Pipeline BPA2.1.0

Shell 2 1

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Showing 10 of 52 repositories

sarek Public Forked from nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

ncgr/sarek’s past year of commit activity

Nextflow 0 MIT 485 0 0 Updated Oct 16, 2025
Metagenomics-Bookdown Public template

ncgr/Metagenomics-Bookdown’s past year of commit activity

TeX 0 0 0 0 Updated Sep 17, 2025
ncgr-INBRE-Bookdown Public

ncgr/ncgr-INBRE-Bookdown’s past year of commit activity

TeX 0 0 1 0 Updated Aug 1, 2025
NIGMS-Sandbox-Pangenomics-Module Public

ncgr/NIGMS-Sandbox-Pangenomics-Module’s past year of commit activity

HTML 0 1 0 0 Updated May 2, 2025
Adjudicator Public
A tool for Adjudicating structural annotation evidence from genome assemblies

ncgr/Adjudicator’s past year of commit activity

Python 0 Apache-2.0 0 0 0 Updated Apr 18, 2025
Cyprinodon Public
Pilot Project NNMC Cvar, Cbron, Cdes

ncgr/Cyprinodon’s past year of commit activity

HTML 0 0 0 0 Updated Dec 11, 2024
DE-Bookdown Public
Differential Expression Workshop

ncgr/DE-Bookdown’s past year of commit activity

HTML 0 0 0 0 Updated Dec 3, 2024
java Public
Various Java apps written at NCGR for a variety of purposes.

ncgr/java’s past year of commit activity

Java 5 3 0 0 Updated Aug 25, 2024
NISE-bioinformatics Public

ncgr/NISE-bioinformatics’s past year of commit activity

HTML 0 0 0 0 Updated Jul 24, 2024
hyena-dna Public Forked from HazyResearch/hyena-dna
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

ncgr/hyena-dna’s past year of commit activity

Assembly 0 Apache-2.0 103 0 0 Updated Jun 15, 2024

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