A Toolbox for Manipulating Biological Sequences in R

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Community-contributed instructions, prompts, and configurations to help you make the most of GitHub Copilot.

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Nextflow pipeline to convert BAM to FASTQ, align, perform QC, assess targeted coverage, call gSNP, call sSNV, call mtSNV, call SVs, call sCNA, and perform subclonal reconstruction

A Framework for Building Robust Shiny Apps

vcfdist: Accurately benchmarking phased variant calls

Working space for the GIAB TR benchmarking project

Tandem repeat genotyping and visualization from PacBio HiFi data

Notes and exercise attempts for "An Introduction to Statistical Learning"