A Python utility for parsing and normalizing various DCC datapackages.

SQL dialect for genomic range queries.

Dragon distributed runtime for HPC and AI applications and workflows

SciPy Pun Essences

A lightweight reimplementation of some of the algorithms in the MEME suite in Python.

Rusty juv

A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.

Create, manage, and run Jupyter notebooks with their dependencies

Repository for the nblink jupyterlite extension.

Prototype your Jupyter Widget in the browser with anywidget and JupyterLite 💡

Genome assembly metadata

a scalable data profiler

A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.

Pythonic class-based interface to LLMs

Convert bioinformatics file formats to Zarr

Scientific colormaps for python, with only numpy dependency

Presentation Solara+AnyWidget at LINCS

A collection of creative AnyWidgets for Python notebook environments

Toolkit for single-cell DNA methylation analysis.

A simple anywidget, built from Mike Bostock's Mario chime snippet.

A JavaScript toolkit for working with chunked, compressed, n-dimensional arrays

A high-performance BigWig and BigBed library in Rust

A tool to load HiC cooler file in R

Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is part of the Tree of Life production suite.

A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.