Isoform-level spatial transcriptomics analysis

Privacy-focused encrypted email for everyone. All-in-one alternative to Gmail + Mailchimp + Sendgrid.

BWK awk modified for biological data

Container and visualization for differential expression (and similar) result tables

⚡ Better `pre-commit`, re-engineered in Rust

Python API and Jupyter widget for Vitessce

ZeroFS - The Filesystem That Makes S3 your Primary Storage. ZeroFS is 9P/NFS/NBD on top of S3. Initially built for www.merklemap.com

RECODE - resolution of curse of dimensionality in single-cell data analysis

Python-powered shell. Full-featured and cross-platform.

An awesome tool to visualize snakemake rule graphs

Streamlink is a CLI utility which pipes video streams from various services into a video player

R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an integration benchmarking toolkit.

The new source code of the LinearFold, linear-time prediction for RNA secondary structures

A drop-in replacement for dplyr, powered by DuckDB for speed.

A package for creating monochrome colour palettes and easily converting rgba values to hex codes

Scaling Single Cell Analysis to Millions of Cells

A command-line utility, a la samtools, that helps to manage and manipulate single-cell data files

🎨🎨🎨 Collection of most color palettes in a single R package

Mobile Shell

Simple utilities to manage R environments

R package implementation of Milo for testing for differential abundance in KNN graphs

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

Rank-To-Group score evaluates contribution of confounding factors

Middleware to create RSS feeds, filter existing feeds and transform them (e.g. fulltext)

Authentication Plug-in for PHPBB using External MySQL Table Source

Nyxt - the hacker's browser.

💀 A Hackable, Fully Featured, Rice Friendly Neovim Configuration