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GLnext Public
Scalable gVCF merging and joint variant calling
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miniwdl Public
Forked from chanzuckerberg/miniwdlA static analysis toolkit for the Workflow Description Language
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transcriptformer Public
Forked from czi-ai/transcriptformer -
wdl Public
Forked from openwdl/wdlWorkflow Description Language - Specification and Implementations
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ai4sqlite3 Public
Natural language query assistant for SQLite databases
Python MIT License UpdatedJun 6, 2025 -
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miniwdl-feedstock Public
Forked from conda-forge/miniwdl-feedstockA conda-smithy repository for miniwdl.
Shell BSD 3-Clause "New" or "Revised" License UpdatedMar 10, 2025 -
TileDB-Vector-Search Public
Forked from TileDB-Inc/TileDB-Vector-SearchCloud-native vector similarity search and storage with efficient, serverless scale-out
Jupyter Notebook MIT License UpdatedJan 28, 2025 -
GenomicSQLite Public
Genomics Extension for SQLite
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sqlite_zstd_vfs Public
SQLite3 extension for read/write storage compression with Zstandard
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sqlite_web_vfs Public
SQLite3 extension for read-only HTTP(S) database access
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spVCF Public
Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently
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PhyloCSF Public
Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions
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chanzuckerberg.r-universe.dev Public
Forked from chanzuckerberg/chanzuckerberg.r-universe.devConfiguration for publishing to R-Universe
UpdatedAug 4, 2023 -
fastp Public
Forked from OpenGene/fastpAn ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
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RGenomicSQLite Public
[WIP / not yet ready] R bindings package for GenomicSQLite
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staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python UpdatedJan 5, 2023 -
TileDB-SOMA Public
Forked from single-cell-data/TileDB-SOMATileDB implementation of the single-cell SOMA API
Python MIT License UpdatedNov 1, 2022 -
idseq-web Public
Forked from chanzuckerberg/czid-webInfectious Disease Sequencing Platform
JavaScript MIT License UpdatedOct 5, 2022 -
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htslib Public
Forked from samtools/htslibC library for high-throughput sequencing data formats.
C Other UpdatedAug 6, 2022 -
iitii Public
Implicit Interval Tree with Interpolation Index
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cpython Public
Forked from python/cpythonThe Python programming language
Python Other UpdatedApr 5, 2022 -
vcf_line_splitter Public
Split a huge VCF file into parts, quickly
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minimap2 Public
Forked from lh3/minimap2A versatile pairwise aligner for genomic and spliced nucleotide sequences
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hts-specs Public
Forked from samtools/hts-specsSpecifications of SAM/BAM and related high-throughput sequencing file formats
TeX UpdatedJul 7, 2021 -
gfabase Public
GFA insert into GenomicSQLite
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SQLiteCpp Public
Forked from SRombauts/SQLiteCppSQLiteC++ (SQLiteCpp) is a smart and easy to use C++ SQLite3 wrapper.
C MIT License UpdatedMay 31, 2021
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