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tldr Public
Reads and summarizes top points from a provided series of articles.
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nextflow-riptide Public
Transcriptome processing and contextualization with riptide
UpdatedApr 15, 2025 -
promptpal Public
Python package for improved LLM interactions using the Google Gemini API.
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codeqai Public
Forked from fynnfluegge/codeqaiLocal first semantic code search and chat | Leverage custom copilots with fine-tuning datasets from code in Alpaca, Conversational, Completion and Instruction format
Python Apache License 2.0 UpdatedFeb 16, 2025 -
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mjenior.github.io Public
Forked from SchlossLab/notebookblogPersonal Website Repo
JavaScript MIT License UpdatedJun 20, 2024 -
hacker-scripts Public
Forked from NARKOZ/hacker-scriptsBased on a true story
JavaScript UpdatedJun 20, 2024 -
nanoGPT Public
Forked from karpathy/nanoGPTThe simplest, fastest repository for training/finetuning medium-sized GPTs.
Python MIT License UpdatedJun 18, 2024 -
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HSSS Public
Forked from kyegomez/HSSSImplementation of a Hierarchical Mamba as described in the paper: "Hierarchical State Space Models for Continuous Sequence-to-Sequence Modeling"
Python MIT License UpdatedJun 17, 2024 -
mamba Public
Forked from state-spaces/mambaMamba SSM architecture
Python Apache License 2.0 UpdatedJun 13, 2024 -
evo Public
Forked from evo-design/evoDNA foundation modeling from molecular to genome scale
Jupyter Notebook Apache License 2.0 UpdatedApr 30, 2024 -
stripedhyena Public
Forked from togethercomputer/stripedhyenaRepository for StripedHyena, a state-of-the-art beyond Transformer architecture
Python Apache License 2.0 UpdatedMar 7, 2024 -
StripedHyenaTrainer Public
Forked from NousResearch/StripedHyenaTrainerPython Apache License 2.0 UpdatedDec 8, 2023 -
riptide Public
Reaction Inclusion by Parsimony and Transcript Distribution
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Smith_etal_Enterococcus Public
C. difficile metabolic modeling in co-culture with E. faecalis
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analysis-scripts Public
Frequently used bioinformatic scripts I generate
Python UpdatedApr 24, 2021 -
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cobrapy Public
Forked from opencobra/cobrapyCOBRApy is a package for constraint-based modeling of biological networks
Python GNU General Public License v2.0 UpdatedAug 14, 2018 -
bigSMALL Public
BacterIal Genome-Scale Metabolic models for AppLied reverse ecoLogy
Python MIT License UpdatedJun 5, 2018 -
Baxter_FITs_Microbiome_2016 Public
Forked from SchlossLab/Baxter_FITs_Microbiome_2016Shell MIT License UpdatedNov 1, 2017 -
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styles Public
Forked from citation-style-language/stylesOfficial repository for Citation Style Language (CSL) citation styles.
Ruby UpdatedDec 16, 2016 -
water-use Public
Forked from DOI-USGS/water-useVisualization using USGS water use data.
JavaScript Creative Commons Zero v1.0 Universal UpdatedDec 14, 2016 -
Blog_scripts Public
A repo to house the scripts I create and write about in my thesis project blog (http://mjenior.github.io/)
Python MIT License UpdatedJun 3, 2016
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