This is script written by me of Lockdown Learning Bioinformatics-along from Simon Cockell(https://github.com/sjcockell/lockdown-learning)

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics …

Processing pipeline for pan-genome visulization and exploration

AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current …

Useful bash one-liners for bioinformatics.

Python Script to create a histogram of the sequences lengths in a Fasta file (useful to get the distribution of Pacbio Reads for example)

A tool for visualizing alignments of reads in regions containing tandem repeats

A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

Scripts written for my Bioinformatics-along on YouTube: https://www.youtube.com/playlist?list=PLzfP3sCXUnxEu5S9oXni1zmc1sjYmT1L9