python version of raincloud

MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and appar…

Publicly maintained list of Tractography and Diffusion Datasets, Software and Pipelines

A Python package for General Graphical Lasso computation

Python package to access a cacophony of neuro-imaging file formats

Surface anaLysis And Modeling

Pycortex is a python-based toolkit for surface visualization of fMRI data

Functional alignment and template estimation library for functional Magnetic Resonance Imaging data

Post-processing of fMRIPrep, NiBabies, and HCP outputs

ciftiTools R package

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

Machine learning for NeuroImaging in Python

Processing pipelines for the HCP

Interactive and static 3D visualisation for functional brain mapping

This is the new MSM implementation.

Supporting code and data for our manuscript on Topological Cluster Statistic

Toolbox for Acquisition and Analysis of CoCoMac Data

Adaptation for NHP brains and pipelines. Pycortex is a python-based toolkit for surface visualization of fMRI data

multi atlas transfer tools for neuroimaging (maTT)

A neuroscience library for Python, intended to complement the existing nibabel library.

onavg is a cortical surface template that was created based on high-quality structural scans of 1,031 brains from OpenNeuro

WU-Minn HCP1200 Data: 3T/7T MR scans from young healthy adults twins and non-twin siblings (ages 22-35) [T1w, T2w, resting-state and task fMRI, high angular resolution dMRI]