Basics of the OSCA book

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format with intelligent transcript handling.

R Interface to Python

A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.

Explore 5,000+ genomes in the terminal. Light, blazing fast 🚀, vim-motion.

Shiny Interactive Web Apps for Single-Cell Data

Fast reading of delimited files

This is the development home of the workflow management system Snakemake. For general information, see

Intermediate Research Software Development Skills In Python Lesson Material

R toolkit for single cell genomics

A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic stem and progenitor cells and differentiated populations

Analysis of cell-cell communication at single-cell resolution

Preprocessing of Droplet-based Single-Cell RNA-seq Data

A simple culinary website.

A Neovim (lua) plugin for working with a markdown zettelkasten / wiki and mixing it with a journal, based on telescope.nvim

My status bar: my build of the modular dwmblocks

Luke's fork of the suckless simple terminal (st) with vim bindings and Xresource compatibility.

Luke's build of dwm

This is the development home of the Snakemake wrapper repository, see