- Mainz, Germany
- https://maximeborry.com
- https://orcid.org/0000-0001-9140-7559
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EvolvePro Public
Forked from mat10d/EvolveProThis is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shot active learning.
Python Other UpdatedJan 5, 2026 -
RiboDetector Public
Forked from hzi-bifo/RiboDetectorAccurate and rapid RiboRNA sequences Detector based on deep learning
Python GNU General Public License v3.0 UpdatedNov 27, 2025 -
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configs Public
Forked from nf-core/configsConfig files used to define parameters specific to compute environments at different Institutions.
Nextflow MIT License UpdatedNov 12, 2025 -
modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedNov 7, 2025 -
variantprioritization Public
Forked from nf-core/variantprioritizationAnalysis pipeline for the functional annotation and translation of somatic SNVs/InDels and copy number abberations for precision cancer medicine using PCGR
Nextflow MIT License UpdatedOct 29, 2025 -
riboseq Public
Forked from nf-core/riboseqPipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.
Nextflow MIT License UpdatedOct 16, 2025 -
superprod2zeus Public
Convert SuperProductivity Worklog Export to Percentage per Project for Zeus time tracking
Python MIT License UpdatedOct 14, 2025 -
DNA_tools Public
A set of tools to play with/analyze genomics data
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riboseq-flow Public
Forked from iraiosub/riboseq-flowA Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.
R MIT License UpdatedJul 31, 2025 -
pydamage Public
Damage parameter estimation for ancient DNA
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nf-admix Public
Simple nextflow pipeline to run unsupervised ADMIXTURE
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bamAlignCleaner Public
Removes unaligned references in BAM alignment file
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skallelego Public
Scikit-allel lego: a few utility functions to complement scikit-allel
Python MIT License UpdatedMar 17, 2025 -
fetchngs Public
Forked from nf-core/fetchngsPipeline to fetch metadata and raw FastQ files from public and private databases
Nextflow MIT License UpdatedMar 7, 2025 -
protinter Public
Protein interaction calculator
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nf-template Public template
Forked from TRON-Bioinformatics/nf-templateNextflow template for fast pipeline generation
Nextflow GNU General Public License v3.0 UpdatedJan 28, 2025 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedJan 23, 2025 -
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corecomb Public
Toolkit to deal with core-genome alignments recombination detection
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read2vcf Public
read2vcf: a simple snakemake pipeline to tranform raw reads into filtered variants
Python UpdatedNov 26, 2024 -
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taxconverter Public
Forked from RasmussenLab/taxconverterUnifies the presentation of taxonomic classifiers output
Python MIT License UpdatedOct 22, 2024 -
sourcepredict Public
Prediction/source tracking of metagenomic samples source using machine learning
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scikit-allel Public
Forked from cggh/scikit-allelA Python package for exploring and analysing genetic variation data
Jupyter Notebook MIT License UpdatedSep 24, 2024