Adding fast_extract to the methylation tools suite, a tool to extract reads from a fastq/fasta file which have had their IDs specified in a text file.

While the extracting step is not that interesting as this could be done using GREP, fast_extract also allows you to create a fastq/fasta file excluding the reads specified by their IDs in a text file.

Static binary release of any tool in this repo that is worth downloading and running at this point.

w50_creator

A working static binary
If input GFF is not sorted, it will die with useful error message
Dies if corrupted input GFF
Allows you to change the column 3 output GFF label on the command line.

Static binary release of any tool in this repo that is worth downloading and running at this point.

w50_creator

• A working static binary
• Warning if chromosomes aren't sorted but does not die
• Fails if there is an issue with the input GFF