Biomni: a general-purpose biomedical AI agent

de novo variant calling in trio using Nanopore long-reads

An R library for the Looker API (4.0)

A library of free open source icons for science illustrations in biology and chemistry

A high-performance topological machine learning toolbox in Python

Get up and running with OpenAI gpt-oss, DeepSeek-R1, Gemma 3 and other models.

R package for fetching and parsing data of the Human Microbiome Compendium

Oxford Nanopore's Basecaller

Unofficial collection of templates and themes in line with INRAE's design system

Bioinformatics containers

Contains the code and workflow for the bacterial strain definition paper with Kostas Kostantinidis

Gene Absence Presence Identification tool.

A Python function that makes flower plots.

Snakemake template for building reusable and scalable machine learning pipelines with mikropml

Genome mapping, consensus generating, variant calling and annotation tool for SARS-COV-2

an example builder to build a container with Travis CI, and push to a Singularity Registry Server (or other endpoint)

Container tools for scientific computing! Docs at https://singularityhub.github.io/singularityhub-docs

Fachprojekt Reproduzierbare Datenanalyse mit Snakemake am Beispiel der Bioinformatik

Bioinformatics Tools

Simple bacterial assembly and annotation pipeline

Apptainer in Docker!

Accurate sample inference from amplicon data with single nucleotide resolution

Strain Resolution ON Graphs

A tool for domain based annotation with databases from the Conserved Domains Database