Python package with helper tools for the nf-core community.

Pipeline for testing drug response prediction models in a statistically and biologically sound way.

Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.

Files for the main nf-core website >>>

Repository to host tool-specific module files for the Nextflow DSL2 community!

Minimalistic Homebrew GUI made with Go, Wails and React.

Landing Page for WailBrew.

Render any Markdown content in Astro, optionally integrating with any existing configuration.

RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control

Test data to be used for automated testing with the nf-core pipelines

⚡ Better `pre-commit`, re-engineered in Rust

Conda recipes for the bioconda channel.

Nextflow public web site

nf-core/deepmutscan is a reproducible, scalable, and community-curated pipeline for analyzing deep mutational scanning (DMS) data using shotgun DNA sequencing.

CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.

Host nf-core logos and templates for making new logos and social preview image

A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)

A DSL for data-driven computational pipelines

Template project for creating Nextflow plugins (beta)

[WIP] A Nextflow plugin to estimate the CO2 footprint of pipeline runs.

Aggregate results from bioinformatics analyses across many samples into a single report.

A small example pipeline used to test new nf-core infrastructure and common code.

Identify and quantify MHC eluted peptides from mass spectrometry raw data

The Nextflow language server

Specification of Nextflow schema

Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)