Repo for the Claude Code Marketplace to use with the Claude for Life Sciences Launch. This will continue to host the marketplace.json long-term, but not the actual MCP servers.

R package for modeling single cell UMI expression data using regularized negative binomial regression

Visualise Clusterings at Different Resolutions

rapids_singlecell: GPU-accelerated framework for scRNA analysis

List of Spatial Transcriptomics related Tools organized per category

An Interactive and Highly-Customizable Single-Cell and Spatial Biology Plotting Library

Package management made easy

Facilitating the use of Deep Visual Proteomics

Interoperate R with Python

Python tool for converting files and office documents to Markdown.

Automatically annotate cell types, consistently across samples.

An interactive explorer for single-cell transcriptomics data

A rich help formatter for argparse

An extremely fast Python type checker and language server, written in Rust.

A markup-based typesetting system that is powerful and easy to learn.

Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022

Awesome list of tools and methods to perform spatial transcriptomic data analysis.

tools and notes for spatial omics

Multimodal Data (.h5mu) implementation for Python

A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.

Multi-sample multi-group scRNA-seq analysis tools

CLIze: Turn Python functions into command-line interfaces

💥 Blazing fast terminal file manager written in Rust, based on async I/O.

Extension of SpatialExperiment with sf