gghic makes visualization of Hi-C/-like data easily in R

Github from the Intro2popGen physalia course

Materials of the course WBIO-A-08 Plant Bioinformatics

A collection of tools for Hi-C data analysis

A cool place to store your Hi-C

Supplemental scripts for the PDX Hi-C paper

Ultra-fast preprocessing and quality control for long-read sequencing data

This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.

Extensions of 'dplyr' and 'fuzzyjoin' Join Functions

All codes associated with MendelPeaG2P project

This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analysis of a pangenome reference of wild and cultivated rice. Be…

Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.

two-stage analysis of multi-environment trials for genomic selection and GWAS

Repo for the R package coloc

This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato breeding“

A repository to host scripts for annotating TEs in the Arabidopsis TAIR12 (Col-CC) genome

Pick colours from an image in R

Mumemto: multi-MUM and MEM finding across pangenomes

Tandem repeat expansion detection or genotyping from long-read alignments

Scripts for analyzing Curcuma genomic data

Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.

Tidy Plots for Scientific Papers