Starred repositories
Scalable Maximum Likelihood Estimation of Phylogenetic Models
Python bindings for the parasail C library.
A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.
Sandbox for Deep-Learning based Computational Protein Design
Simplifying conditional Polars Expressions with Python 🐍 🐻❄️
Convert documents into audio with LLMs
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
An interactive app that loads plasmid antiphage defense metadata and edge data from Parquet files and renders a GPU-accelerated network visualization using Graphology and Sigma.js.
PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.
BBTools: Official suite of fast, multithreaded bioinformatics tools for DNA/RNA analysis. BBMap aligner, BBDuk trimmer, BBMerge, and 90+ other tools. Actively maintained by Brian Bushnell.
Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
🦜✨ Chat system, MCP server, and reusable components to improve LLMs capabilities when generating SPARQL queries
An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses
🍇 GRAPE is a Rust/Python Graph Representation Learning library for Predictions and Evaluations
Python bindings to Inference engine for GLiNER models written in Rust
Generalist and Lightweight Model for Relation Extraction (Extract any relationship types from text)
A python package to efficiently extract linguistic features for text/NLP datasets
A user-friendly pipeline for viral diversity analysis and characterization.