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@Ultimagen

Ultima Genomics

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  1. healthomics-workflows healthomics-workflows Public

    UltimaGenomics repository for workflows compatible with AWS HealthOmics

    WDL 19 10

  2. VariantCalling VariantCalling Public

    Ultima scripts related to downstream processing of WGS, MRD, methylation analysis

    Jupyter Notebook 10

  3. ugbio-utils ugbio-utils Public

    Ultima Genomics bioinfo-utils

    Python 2 1

  4. FREEC FREEC Public

    Forked from BoevaLab/FREEC

    Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

    C++ 1 1

  5. test-lfs test-lfs Public

    test git lfs issues

  6. picard picard Public

    Forked from broadinstitute/picard

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java

Repositories

Showing 10 of 22 repositories
  • ugbio-utils Public

    Ultima Genomics bioinfo-utils

    Ultimagen/ugbio-utils’s past year of commit activity
    Python 2 1 0 13 Updated Oct 26, 2025
  • VariantCalling Public

    Ultima scripts related to downstream processing of WGS, MRD, methylation analysis

    Ultimagen/VariantCalling’s past year of commit activity
    Jupyter Notebook 10 Apache-2.0 0 5 5 Updated Oct 26, 2025
  • healthomics-workflows Public

    UltimaGenomics repository for workflows compatible with AWS HealthOmics

    Ultimagen/healthomics-workflows’s past year of commit activity
    WDL 19 10 2 1 Updated Oct 26, 2025
  • FREEC Public Forked from BoevaLab/FREEC

    Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

    Ultimagen/FREEC’s past year of commit activity
    C++ 1 51 0 0 Updated Oct 21, 2025
  • HLA-LA Public Forked from DiltheyLab/HLA-LA

    Fast HLA type inference from whole-genome data

    Ultimagen/HLA-LA’s past year of commit activity
    C++ 0 GPL-3.0 43 0 0 Updated Oct 19, 2025
  • gatk Public Forked from broadinstitute/gatk

    Official code repository for GATK versions 4 and up

    Ultimagen/gatk’s past year of commit activity
    Java 0 622 0 4 Updated Oct 13, 2025
  • parascopy Public Forked from tprodanov/parascopy

    Copy number estimation and variant calling for duplicated genes using WGS.

    Ultimagen/parascopy’s past year of commit activity
    Python 0 MIT 5 0 0 Updated Oct 5, 2025
  • jalign Public

    Alignment for SV/CNV calls

    Ultimagen/jalign’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Oct 5, 2025
  • hmftools Public Forked from hartwigmedical/hmftools

    Various algorithms for analysing genomics data

    Ultimagen/hmftools’s past year of commit activity
    Java 0 GPL-3.0 63 0 0 Updated Oct 5, 2025
  • gridss Public Forked from PapenfussLab/gridss

    GRIDSS: the Genomic Rearrangement IDentification Software Suite

    Ultimagen/gridss’s past year of commit activity
    Java 0 76 0 0 Updated Oct 5, 2025
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