Skip to content

Update 20 packages #63

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom
Merged
merged 1 commit into from
Oct 13, 2025
Merged

Update 20 packages #63

merged 1 commit into from
Oct 13, 2025

Conversation

@milanmlft
Copy link
Member

🤖 This is an automated build

This will update 20 packages in your lesson with the following versions:

# NEW OR REMOVED PACKAGES -------------------------------
- MASS  [required by ggplot2]
- mgcv  [required by ggplot2]
- MASS   [7.3-65 -> *]
- mgcv   [1.9-1 -> *]
- nlme   [3.1-168 -> *]

# CRAN -----------------------------------------------------------------------
- broom           [1.0.9 -> 1.0.10]
- dbplyr          [repo: RSPM -> CRAN; ver: 2.5.0 -> 2.5.1]
- dtplyr          [repo: RSPM -> CRAN; ver: 1.3.1 -> 1.3.2]
- forcats         [repo: RSPM -> CRAN; ver: 1.0.0 -> 1.0.1]
- gargle          [repo: RSPM -> CRAN; ver: 1.5.2 -> 1.6.0]
- ggplot2         [3.5.2 -> 4.0.0]
- googledrive     [repo: RSPM -> CRAN; ver: 2.1.1 -> 2.1.2]
- googlesheets4   [repo: RSPM -> CRAN; ver: 1.1.1 -> 1.1.2]
- magrittr        [repo: RSPM -> CRAN; ver: 2.0.3 -> 2.0.4]
- Matrix          [1.7-3 -> 1.7-4]
- openssl         [2.3.3 -> 2.3.4]
- pillar          [1.11.0 -> 1.11.1]
- rmarkdown       [repo: RSPM -> CRAN; ver: 2.29 -> 2.30]
- stringr         [repo: RSPM -> CRAN; ver: 1.5.1 -> 1.5.2]
- visNetwork      [repo: RSPM -> CRAN; ver: 2.1.2 -> 2.1.4]
- vroom           [repo: RSPM -> CRAN; ver: 1.6.5 -> 1.6.6]

# https://carpentries.r-universe.dev -----------------------------------------
- ragg            [repo: carpentries -> https://carpentries.r-universe.dev; ver: 1.4.0 -> 1.5.0; ref: v1.4.0 -> v1.5.0; sha: 21597be6 -> 0ca12a78]
- systemfonts     [repo: carpentries -> https://carpentries.r-universe.dev; ver: 1.2.3 -> 1.3.1; ref: v1.2.3 -> v1.3.1; sha: 2f0bfc26 -> cbb69fb6]
- textshaping     [repo: carpentries -> https://carpentries.r-universe.dev; ver: 1.0.2 -> 1.0.3; ref: v1.0.2 -> v1.0.3; sha: 30946517 -> 1193ceb3]

# https://packagemanager.posit.co/cran/__linux__/jammy/latest ----------------
- S7              [* -> 0.2.0]

⏱️ In a few minutes, a comment will appear that will show you how the output has changed based on these updates.

If you want to inspect these changes locally, you can use the following code to check out a new branch:

git fetch origin update/packages
git checkout update/packages

@github-actions
Copy link

github-actions bot commented Oct 7, 2025 •
edited
Loading

Thank you!

Thank you for your pull request 😃

🤖 This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

  • 🎯 correct output
  • 🖼️ correct figures
  • ❓ new warnings
  • ‼️ new errors

Rendered Changes

🔍 Inspect the changes: https://github.com/UCL/ClinicianCoders/compare/md-outputs..md-outputs-PR-63

The following changes were observed in the rendered markdown documents:

 01-rstudio-intro.md                           |    2 +-
 02-project-intro.md                           |    2 +-
 config.yaml (gone)                            |   93 -
 fig/08-plot-ggplot2-rendered-ch5-sol-1.png    |  Bin 33145 -> 33032 bytes
 fig/statistics-rendered-unnamed-chunk-1-1.png |  Bin 4363 -> 4346 bytes
 fig/statistics-rendered-unnamed-chunk-2-1.png |  Bin 4533 -> 4355 bytes
 fig/statistics-rendered-unnamed-chunk-3-1.png |  Bin 4447 -> 4618 bytes
 fig/statistics-rendered-unnamed-chunk-3-2.png |  Bin 4309 -> 4403 bytes
 md5sum.txt                                    |   46 +-
 renv.lock (gone)                              | 4306 -------------------------
 statistics.md                                 |    8 +-
 11 files changed, 29 insertions(+), 4428 deletions(-)
What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible.

This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

⏱️ Updated at 2025-10-07 00:40:12 +0000

github-actions bot pushed a commit that referenced this pull request Oct 7, 2025
@actions-user
differences for PR #63
238e754
@milanmlft milanmlft merged commit 3d4cdad into main Oct 13, 2025
3 checks passed
@milanmlft milanmlft deleted the update/packages branch October 13, 2025 14:24
github-actions bot pushed a commit that referenced this pull request Oct 13, 2025
@actions-user @milanmlft
markdown source builds
96ad131 
Auto-generated via `{sandpaper}`
Source  : 3d4cdad
Branch  : main
Author  : Milan Malfait <[email protected]>
Time    : 2025-10-13 14:24:23 +0000
Message : [actions] update 20 packages (#63)

Co-authored-by: milanmlft <[email protected]>
github-actions bot pushed a commit that referenced this pull request Oct 13, 2025
@actions-user @milanmlft
site deploy
8ace197 
Auto-generated via `{sandpaper}`
Source  : 96ad131
Branch  : md-outputs
Author  : GitHub Actions <[email protected]>
Time    : 2025-10-13 14:34:00 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 3d4cdad
Branch  : main
Author  : Milan Malfait <[email protected]>
Time    : 2025-10-13 14:24:23 +0000
Message : [actions] update 20 packages (#63)

Co-authored-by: milanmlft <[email protected]>
github-actions bot pushed a commit that referenced this pull request Oct 14, 2025
@actions-user @milanmlft
markdown source builds
63341b4 
Auto-generated via `{sandpaper}`
Source  : 3d4cdad
Branch  : main
Author  : Milan Malfait <[email protected]>
Time    : 2025-10-13 14:24:23 +0000
Message : [actions] update 20 packages (#63)

Co-authored-by: milanmlft <[email protected]>
github-actions bot pushed a commit that referenced this pull request Oct 14, 2025
@actions-user @milanmlft
site deploy
ef5d83f 
Auto-generated via `{sandpaper}`
Source  : 63341b4
Branch  : md-outputs
Author  : GitHub Actions <[email protected]>
Time    : 2025-10-14 00:32:11 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 3d4cdad
Branch  : main
Author  : Milan Malfait <[email protected]>
Time    : 2025-10-13 14:24:23 +0000
Message : [actions] update 20 packages (#63)

Co-authored-by: milanmlft <[email protected]>
github-actions bot pushed a commit that referenced this pull request Oct 21, 2025
@actions-user @milanmlft
markdown source builds
c832995 
Auto-generated via `{sandpaper}`
Source  : 3d4cdad
Branch  : main
Author  : Milan Malfait <[email protected]>
Time    : 2025-10-13 14:24:23 +0000
Message : [actions] update 20 packages (#63)

Co-authored-by: milanmlft <[email protected]>
github-actions bot pushed a commit that referenced this pull request Oct 21, 2025
@actions-user @milanmlft
site deploy
3106e9b 
Auto-generated via `{sandpaper}`
Source  : c832995
Branch  : md-outputs
Author  : GitHub Actions <[email protected]>
Time    : 2025-10-21 00:50:55 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 3d4cdad
Branch  : main
Author  : Milan Malfait <[email protected]>
Time    : 2025-10-13 14:24:23 +0000
Message : [actions] update 20 packages (#63)

Co-authored-by: milanmlft <[email protected]>
github-actions bot pushed a commit that referenced this pull request Oct 28, 2025
@actions-user @milanmlft
markdown source builds
ccdd6b9 
Auto-generated via `{sandpaper}`
Source  : 3d4cdad
Branch  : main
Author  : Milan Malfait <[email protected]>
Time    : 2025-10-13 14:24:23 +0000
Message : [actions] update 20 packages (#63)

Co-authored-by: milanmlft <[email protected]>
github-actions bot pushed a commit that referenced this pull request Oct 28, 2025
@actions-user @milanmlft
site deploy
d64822b 
Auto-generated via `{sandpaper}`
Source  : ccdd6b9
Branch  : md-outputs
Author  : GitHub Actions <[email protected]>
Time    : 2025-10-28 00:36:49 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 3d4cdad
Branch  : main
Author  : Milan Malfait <[email protected]>
Time    : 2025-10-13 14:24:23 +0000
Message : [actions] update 20 packages (#63)

Co-authored-by: milanmlft <[email protected]>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Reviewers

No reviews

Assignees

No one assigned

Labels

type: package cache

Projects

None yet

Milestone

No milestone

Development

Successfully merging this pull request may close these issues.

2 participants

@milanmlft