🧑‍🏫 SIB course on using LLM for biodata exploration

Compgen Course 2025, Module 3 Course Material, Multi-omics integration using deep learning

Tool for plotting sequencing data along genomic coordinates.

GeseqFold is a software tool devolped to process transcriptomic data and conduct differential gene expression analysis using the ordinary least squares (OLS) regression model.

Jupyter notebooks for the AI in Biology course at https://aibiology.github.io

Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.

Prodigal Gene Prediction Software

Predictive Power Score (PPS) in Python

Rmd source files for the HarvardX series PH525x

Automatically Visualize any dataset, any size with a single line of code. Created by Ram Seshadri. Collaborators Welcome. Permission Granted upon Request.

A set of icons for biology

GeneMANIA helps you predict the function of your favourite genes and gene sets.

A programming framework for agentic AI

R/qtl: A QTL mapping environment

Genomic Pre-trained Network

Modeltime Time Series Analysis Course

Presentations that I have made or am working on that I will make.

My personal website

Data Science with Python

A Time Series Analysis of the healthyverse R pacakges

Extending Excel with Python and R, published by Packt

Repository for mainly R tips and tricks for my blog. I also include some VBA, SQL, C and Linux Usage.

An Analysis of the CRAN Downloads for {healthyverse} packages.

Inference code for LLaMA models

VIP cheatsheets for Stanford's CS 229 Machine Learning

Gene Set Enrichment Analysis in Python