Everything Public Media, in One Place

A curated list of host-parasite information

A list of Reddit channels every programmer should follow

ChIP-seq analysis notes from Ming Tang

Community projects to install the Jagex Launcher and use Jagex Accounts in Linux

A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessible.

List of Computer Science courses with video lectures.

Data Apps & Dashboards for Python. No JavaScript Required.

A comprehensive tutorial about GWAS and PRS

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

Cloud-native genomic dataframes and batch computing

Scripts to download genomes from the NCBI FTP servers

A cross-platform command-line tool for executing jobs in parallel

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtool…

Python library to facilitate genome assembly, annotation, and comparative genomics

A comprehensive library for computational molecular biology

👁️ Python library to plot DNA sequence features (e.g. from Genbank files)

Unix, R and python tools for genomics and data science

Aggregate results from bioinformatics analyses across many samples into a single report.

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Toolkit for processing sequences in FASTA/Q formats

Official code repository for GATK versions 4 and up

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Applied Computational Genomics Course at UU: Spring 2020

📖 A collection of pure bash alternatives to external processes.

A curated list of resources for learning bioinformatics.

Data Engineering Zoomcamp is a free 9-week course on building production-ready data pipelines. The next cohort starts in January 2026. Join the course here 👇🏼