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Structural Variant Identification Method using Long Reads
Scalable gVCF merging and joint variant calling for population sequencing projects
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
Find, circularise and annotate mitogenome from PacBio assemblies
Ultra-fast preprocessing and quality control for long-read sequencing data
📊 A universal enrichment tool for interpreting omics data
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
Structural variation caller using third generation sequencing
Dotplot large Genomes in an Interactive, Efficient and Simple way
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
A method for measuring chromosome-specific telomere length from long reads
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
A pipeline to generate a phylogenetic tree from huge SNP data
A new simple and efficient software to PCA and Cluster For popolation VCF File
Fast genome-wide functional annotation through orthology assignment
A single molecule sequence assembler for genomes large and small.
Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
IQ-TREE software version 2: phylogenetics by maximum likelihood