RShiny app to automate the analysis of 96-well plates such as the fitting of dose-response curves for Pseduotype Micro Neutralisation (pMN) assays

Learn how to package and publish your scientific research software using GitHub Actions.

Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)

Analysis and data from "Historical trends demonstrate a pattern of increasingly frequent and severe spillover events of high-consequence zoonotic viruses."

This side project was done for a PhD application research proposal as a proof of concept

Assembly and binning of metagenomes

Yet another redundant workflow engine

Repository for the Anczukow-Lab splicing pipeline

Unconstrained lattice antibody-antigen bindings generator

Code for Attentive cross-modal paratope prediction

Listing of papers about machine learning for proteins.

A roadmap connecting many of the most important concepts in machine learning, how to learn them and what tools to use to perform them.

Valentin Lucet // Msc Thesis // 2018-2020

Scripts, text and processed data for thesis assembly.

Scrapes the civil service jobs website

Branching-process model of COVID-19 control, using bidirectional contact tracing.

Code for reproducing results on the Bits of DNA blog

General Purpose code for the activities of the Bioinformatics Core

RNAseq analysis notes from Ming Tang

The fastest way to develop full-stack web apps with React & Node.js.

convert a singularity image back to Docker, full circle! #containerfriends

The *ies. A series of <star>-ies util snippets, scripts or templates that I use day to day.

Jackson Labs hands-on workshop material for working in cloud Jupyter Notebook Sessions on CloudOS

Minimal nextflow pipeline to check integrity of BAM files with various tools and to generate the checksum (md5) of each files.

single-cell sequencing of flu infected cells enriched for IFN+ ones

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

A topic-centric list of HQ open datasets.

Super small biological datasets for unit testing

tools for reading, writing, merging, and remapping SNPs