Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

Accurate metagenomic profiling && Fast large-scale sequence/genome searching

potato: portable text annotation tool

CRyPTIC data processing pipelines

📖 Search Index for genomic data.

LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash

A signature-based search engine

"rsync for cloud storage" - Google Drive, S3, Dropbox, Backblaze B2, One Drive, Swift, Hubic, Wasabi, Google Cloud Storage, Azure Blob, Azure Files, Yandex Files

Parse Redis dump.rdb files, Analyze Memory, and Export Data to JSON

Julia interface to Google's LevelDB key value database

Redis Cluster lib in Python

Sequence Bloom Trees with All/Some split

Paper about the estimation of cardinalities from HyperLogLog sketches

Django app that enables staff to log in as other users using their own credentials.

C network daemon for HyperLogLogs

Dynamic succinct/compressed data structures

Auto-generate a Python module that wraps a Nim module.

Fast exact nearest neighbor search in Hamming distance on binary codes with Multi-index hashing

Python framework for fast (approximated) nearest neighbour search in large, high-dimensional data sets using different locality-sensitive hashes.

A fast Python implementation of locality sensitive hashing.

python package to read and write the Newick format

Lock context manager implemented via redis SET NX EX and BLPOP.

Cython-based, NumPy-aware automatic wrapper generation for C / C++.

Library for Reading Bioinformatic Sequence Data in C

Analysis toolkit and programming library for k-mer profiles

A collection of design patterns/idioms in Python

Microsoft Azure Storage Library for Python

Super S3 command line tool