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<code>babs merge</code> error when deleting <code>merge_ds</code>

bugIssues noting problems and PRs fixing those problems.Issues noting problems and PRs fixing those problems.

Status: Open.

#323 In PennLINC/babs;

· tien-tong opened on Dec 21, 2025

FutureWarning: Deprecated downcasting behavior in pandas .fillna within babs.utils

Status: Open.

#319 In PennLINC/babs;

· tien-tong opened on Dec 9, 2025

<code>babs init</code> doesn't filter subjects based on the <code>required files</code> field of the container-config yaml

bugIssues noting problems and PRs fixing those problems.Issues noting problems and PRs fixing those problems.

Status: Open.

#314 In PennLINC/babs;

· singlesp opened on Sep 17, 2025

sbref is added to BIDS filter file when it can't be used

bugIssues noting problems and PRs fixing those problems.Issues noting problems and PRs fixing those problems.

Status: Open.

#305 In PennLINC/babs;

· tsalo opened on May 29, 2025

if <code>merge</code> is run prior to <code>sync-code</code>, <code>sync-code</code> will fail

bugIssues noting problems and PRs fixing those problems.Issues noting problems and PRs fixing those problems.

Status: Open.

#303 In PennLINC/babs;

· tien-tong opened on May 19, 2025

babs status does not correctly show how many jobs have failed

bugIssues noting problems and PRs fixing those problems.Issues noting problems and PRs fixing those problems.

Status: Open.

#298 In PennLINC/babs;

· B-Sevchik opened on May 13, 2025

babs status after babs merge lists 0 results because the branches have been deleted

bugIssues noting problems and PRs fixing those problems.Issues noting problems and PRs fixing those problems.

Status: Open.

#295 In PennLINC/babs;

· mattcieslak opened on Apr 29, 2025

[DOCS] update BABS programs (CLIs) figure

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#283 In PennLINC/babs;

· zhao-cy opened on Apr 5, 2025

Make qsirecon expand outputs in the datalad run

enhancementNew feature or requestNew feature or request

Status: Open.

#278 In PennLINC/babs;

· mattcieslak opened on Apr 1, 2025

installation page missing info on installing babs

bugIssues noting problems and PRs fixing those problems.Issues noting problems and PRs fixing those problems.

Status: Open.

#276 In PennLINC/babs;

· audreycluo opened on Mar 31, 2025

<code>fmriprep</code> not added to output directory name

bugIssues noting problems and PRs fixing those problems.Issues noting problems and PRs fixing those problems.

Status: Open.

#274 In PennLINC/babs;

· smeisler opened on Mar 30, 2025

Infer container name from container dataset when possible

enhancementNew feature or requestNew feature or request

Status: Open.

#247 In PennLINC/babs;

· tsalo opened on Mar 21, 2025